Glyma09g08350 - SoyBase

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Report for Sequence Feature Glyma09g08350

Feature Type:	gene_model
Chromosome:	Gm09
Start:	7515166
stop:	7523811
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19220	AT	Annotation by Michelle Graham. TAIR10: auxin response factor 19 \| chr1:6628395-6632779 REVERSE LENGTH=1086	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009725	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
PF06507	PFAM	Auxin response factor	JGI		ISS
UniRef100_G7JS69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor n=1 Tax=Medicago truncatula RepID=G7JS69_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MHI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHI6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08350

Paralog	Evidence	Comments
Glyma15g19980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g072200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g08350

Limit To All Plant Sequences

>Glyma09g08350.1   sequence type=CDS   gene model=Glyma09g08350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGTTGGAAGTGTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCTGCATCCATGCAAAAGGAGGCTGACTTCATACCTAGTTATCCTAACCTTCCATCCAAATTGATTTGCATGCTTCACAATGTTGCCTTGCACGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACACTTCAACCTGTAAATAAATATGACAAGGAAGCACTATTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACCGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCGGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGAGGACAACCGAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCAGTTCTTTTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGGGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGCCCGTTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCCCTGTTCAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAATCAGGGGTACGCAGATATATGGGTACAATCACTGGTATCACTGACTTGGATCCTGTCCGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGACTGCCGGTGAGCGCCCGAGCAGGGTTTCTATTTGGGATATTGAGCCAGTGGTGACTCCTTTCTATATTTGTCCTCCTCCATTTTTTAGGCCTAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCAATGCCCTGGCTTGGAGACGACCTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTTCACCAAATCTTCAATTTAACAAACCTAATTTAGCAAACCAAGTCAACCAATTGCAACAATCCCCAACGTCATGGTCTCCGCAGCAGCAGCAGCAGCAACAACAGCAGAAGCTGCAGTCAATGTTGCAAACACCCTTAAATCCGCTCCAGCAACAGAGGCAACAACAGCTGCCCGTACCACAAAACCTGCCACAACCACAGCAACAACAACCCCAAATGCCTCAACAGAGAGCGCAACAGCCACAAGAACAGCAACAGCAGTCGTGTCAACAGACCATCATGAATAACGGGGCAGTTGCTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTATCATACTCACAACTTCAGCAACAGCAATTAATCTCAGGAAGTATCCCACCCCAACAATGTTTTCCATCGCCCAATAAGAATACATTGCTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGATCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCTGCAGCAGCAGCAGCAACAGACACAGTTGCAATCATCTCCGTTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAGCAACCACAAATGACTCAAATGTCACAGCAAAACAGCTCAGACCAACAACCACAGTTACAGATGCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGAAACCCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAGCAAAATACTCATCAACAAAACCAGCAATTTCCGCAGCTGCCTCTATCACAGGGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTCTCAATGGCAACAACTACTCTTCTTCATCTCTGATGCAAACACAGCAGCTTTCGGTGAACCAACCCCATAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCCGAATCTGATGAAAAGAAATCAACAAGTATCAGCCACATTAGGAGGACCTTCGGTAGTTGAACCCACCAATCATCTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTGCCCAGTGTAAGAGGAACTGATCAGCTGAAGTTCAAAGGGACTGTTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTCGATGGATTAACACCTGATACTTTGCTCTCAAGAGGCTATGATTCTCAGAAAGATTTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCCTTAGTCCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCAAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGGATGTTTGGAATTGAAGGACAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTTCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCTGTCCCAAATCAAGCTTGTAGTGGAACAGATAATGGCAATGCGTGGAGGGGACAGTATGATGATAATTCTGCAGCCTCATTTAATCGATAA

Predicted protein sequences of Glyma09g08350

Limit To All Plant Sequences

>Glyma09g08350.1   sequence type=predicted peptide   gene model=Glyma09g08350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSVVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEALLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNALHGNLTTDDPSKLLSFQAPVLSSPNLQFNKPNLANQVNQLQQSPTSWSPQQQQQQQQQKLQSMLQTPLNPLQQQRQQQLPVPQNLPQPQQQQPQMPQQRAQQPQEQQQQSCQQTIMNNGAVASNQIPNQCVQQPVSYSQLQQQQLISGSIPPQQCFPSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQLQQQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSDQQPQLQMLQKLQQQQQQQQQQQQQKPLSTSSPLLQSQLLQQQNTHQQNQQFPQLPLSQGHQPQQLGNNAFSMEKLLNGNNYSSSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPNLMKRNQQVSATLGGPSVVEPTNHLMQELHSKSEMQIKHELPSVRGTDQLKFKGTVADQMEASSGTSYCIDPNNIHQNFPLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAALSPQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR*

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