Report for Sequence Feature Glyma09g08230
Feature Type: gene_model
Chromosome: Gm09
Start: 7297642
stop: 7299914
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g08230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72490 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287
SoyBase E_val: 8.00E-34 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1L1R7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L1R7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LNR9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F1L3.5 n=1 Tax=Arabidopsis thaliana RepID=Q9LNR9_ARATH
SoyBase E_val: 1.00E-17 ISS
Expression Patterns of Glyma09g08230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g08230
Paralog Evidence Comments
Glyma15g19790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g08230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g071100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g08230
Coding sequences of Glyma09g08230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g08230.1 sequence type=CDS gene model=Glyma09g08230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGATTTTTGAATGGATGCAAAACAGGATCAATGGGAGCAATGGAAAAAAGAAACAAAGTGGCTCAATTTCAACTACTAGTAATTACAATATGAGGCATGAACCTTGCAAACAAGAGTTCAGTGACTGGCCTCAAGCACTCCTTGCTATCGGAACATTTGGGGGAAACAACTTGAAAGAAGATTCGGGTGGAAGGAGTAACAACACCGCAGAGGATTCGTCTTCCTTTCAGGATTGCACACAAGAGATCACTCTTGAAGATGTTGGCAATCTTCAGAATGAGTTCAGCATATTCTTTAAGGGGCCAAATTTGGCAGGTGAACAAGAAGAACACACCAATGATCTTATCAAAGAAAATGAGTCTCCTTGTGATGGCTCCAATGTTAGCCGTGGTAATTTCTGTCCAAGCAATAGTATAATATTCAGCAGGGGAAAAGATTGTAGTTTGGATCATAGCAGTAAGAAAGGTGTTGGGAAGAAATCACTTTCTTTTCTTCTTAAGAAGATGCTTGCTTGCAAAAGTGGATTTCAACCTACCCCTTTGTTCAAAGATCTACTTTCCACTGAGTCCAGAATGGAAAAGATTTTGAGGGCAATACTTCACAAAAAGATATATCCCCAAGGTTCATGTTCAACAACACCGTTTGTAAAGAAGTATCTTGAAGCCACACCAATTTCTGATGATGGGGAGGATGATGATGATGAAGAGGAGCTTGCTGCTGCTGCAGCAGAAAATGGATGTAAATGGGTCAAGACTGATTCTGAATATATTGTTCTTGAGATATAA
Predicted protein sequences of Glyma09g08230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g08230.1 sequence type=predicted peptide gene model=Glyma09g08230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKIFEWMQNRINGSNGKKKQSGSISTTSNYNMRHEPCKQEFSDWPQALLAIGTFGGNNLKEDSGGRSNNTAEDSSSFQDCTQEITLEDVGNLQNEFSIFFKGPNLAGEQEEHTNDLIKENESPCDGSNVSRGNFCPSNSIIFSRGKDCSLDHSSKKGVGKKSLSFLLKKMLACKSGFQPTPLFKDLLSTESRMEKILRAILHKKIYPQGSCSTTPFVKKYLEATPISDDGEDDDDEEELAAAAAENGCKWVKTDSEYIVLEI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
