Glyma09g08190 - SoyBase

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Report for Sequence Feature Glyma09g08190

Feature Type:	gene_model
Chromosome:	Gm09
Start:	7252834
stop:	7257001
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05830	AT	Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein \| chr2:2229759-2231839 FORWARD LENGTH=374	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019509	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0044249	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular biosynthetic process	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005851	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 2B complex	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0046523	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-methyl-5-thioribose-1-phosphate isomerase activity	SoyBase	N/A	ISS
KOG1468	KOG	Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2)	JGI		ISS
PTHR10233	Panther	TRANSLATION INITIATION FACTOR EIF-2B	JGI		ISS
PTHR10233:SF6	Panther	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT-RELATED	JGI		ISS
PF01008	PFAM	Initiation factor 2 subunit family	JGI		ISS
UniRef100_G7IGG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Methylthioribose-1-phosphate isomerase n=1 Tax=Medicago truncatula RepID=G7IGG7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7IGG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methylthioribose-1-phosphate isomerase n=1 Tax=Medicago truncatula RepID=G7IGG7_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08190

Paralog	Evidence	Comments
Glyma15g19690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g070700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g08190

Limit To All Plant Sequences

>Glyma09g08190.2   sequence type=transcript   gene model=Glyma09g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGAGTCCAACGAAGTTGCAGCCACAACGCTCCAAGCCATATGCTACAAGCGCGGTTCCCTCCAGCTTCTCGATCAGAGAAAGCTCCCTCTGGAGACAGTTTACTTGGAAATTCGGGATTCAACGGATGGCTGGAATGCCATACGGGAAATGGTGGTCCGGGGAGCACCTGCTATTGCAATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATTTTAATGGGTCAGCTACTGATGCTGTATCCTTGCTGCAGAAGAAATTAGAATATCTTGTCACAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATAGAGCTATTGGTTCTTATGGAGCTAGTATTATTCAACAACAAACAGAGAAACAAAAGCTTTCTGTTTTGACTCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACTCTTATTGCCGATTCTGCTGACGATCGGGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGCGTTGCCTTGTCCGCTAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTAACTTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGGTCTCCCAAGGAATTGCTGAACACACATGGAGGACTTGGAGAGCAGATTGCTGCCTCAGGAATTTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAATCTAATATCGGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCATTTGACATCAAAGCCTTCGTACAGAAAACAGGTTAA

Coding sequences of Glyma09g08190

Limit To All Plant Sequences

>Glyma09g08190.1   sequence type=CDS   gene model=Glyma09g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGAGTCCAACGAAGTTGCAGCCACAACGCTCCAAGCCATATGCTACAAGCGCGGTTCCCTCCAGCTTCTCGATCAGAGAAAGCTCCCTCTGGAGACAGTTTACTTGGAAATTCGGGATTCAACGGATGGCTGGAATGCCATACGGGAAATGGTGGTCCGGGGAGCACCTGCTATTGCAATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATTTTAATGGGTCAGCTACTGATGCTGTATCCTTGCTGCAGAAGAAATTAGAATATCTTGTCACAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATAGAGCTATTGGTTCTTATGGAGCTAGTATTATTCAACAACAAACAGAGAAACAAAAGCTTTCTGTTTTGACTCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACTCTTATTGCCGATTCTGCTGACGGTTATTGGCCGGACATGTGGATGCTGTTGTTGTTGGGGCAGATCGGGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGCGTTGCCTTGTCCGCTAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTAA

>Glyma09g08190.2   sequence type=CDS   gene model=Glyma09g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGAGTCCAACGAAGTTGCAGCCACAACGCTCCAAGCCATATGCTACAAGCGCGGTTCCCTCCAGCTTCTCGATCAGAGAAAGCTCCCTCTGGAGACAGTTTACTTGGAAATTCGGGATTCAACGGATGGCTGGAATGCCATACGGGAAATGGTGGTCCGGGGAGCACCTGCTATTGCAATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATTTTAATGGGTCAGCTACTGATGCTGTATCCTTGCTGCAGAAGAAATTAGAATATCTTGTCACAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATAGAGCTATTGGTTCTTATGGAGCTAGTATTATTCAACAACAAACAGAGAAACAAAAGCTTTCTGTTTTGACTCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACTCTTATTGCCGATTCTGCTGACGATCGGGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGCGTTGCCTTGTCCGCTAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTAACTTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGGTCTCCCAAGGAATTGCTGAACACACATGGAGGACTTGGAGAGCAGATTGCTGCCTCAGGAATTTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAATCTAATATCGGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCATTTGACATCAAAGCCTTCGTACAGAAAACAGGTTAA

Predicted protein sequences of Glyma09g08190

Limit To All Plant Sequences

>Glyma09g08190.1   sequence type=predicted peptide   gene model=Glyma09g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFESNEVAATTLQAICYKRGSLQLLDQRKLPLETVYLEIRDSTDGWNAIREMVVRGAPAIAIAAALSLAVEVFNLDFNGSATDAVSLLQKKLEYLVTSRPTAVNLSDAATKLKEVISNAAATTSEGRSVFQVYIDAAEVMLEDDVASNRAIGSYGASIIQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLKRAYCTETRPFNQGSRLTAFELVHEKIPGTLIADSADGYWPDMWMLLLLGQIGLHQMVTQPTKLEPTALPCPLSFIMYLFMWLHP*

>Glyma09g08190.2   sequence type=predicted peptide   gene model=Glyma09g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFESNEVAATTLQAICYKRGSLQLLDQRKLPLETVYLEIRDSTDGWNAIREMVVRGAPAIAIAAALSLAVEVFNLDFNGSATDAVSLLQKKLEYLVTSRPTAVNLSDAATKLKEVISNAAATTSEGRSVFQVYIDAAEVMLEDDVASNRAIGSYGASIIQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLKRAYCTETRPFNQGSRLTAFELVHEKIPGTLIADSADDRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNTHGGLGEQIAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTG*

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