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Report for Sequence Feature Glyma09g08140

Feature Type:gene_model
Chromosome:Gm09
Start:7195479
stop:7197068
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g08140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G05910AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF567) | chr2:2258512-2259376 REVERSE LENGTH=191 SoyBaseE_val: 3.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04525PFAM Protein of unknown function (DUF567) JGI ISS
UniRef100_I1L1Q7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L1Q7_SOYBN SoyBaseE_val: 4.00E-145ISS
UniRef100_Q01J32UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0140O07.11 protein n=3 Tax=Oryza sativa RepID=Q01J32_ORYSA SoyBaseE_val: 2.00E-70ISS

Expression Patterns of Glyma09g08140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08140
ParalogEvidenceComments
Glyma15g19660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g070200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g08140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g08140
>Glyma09g08140.1   sequence type=CDS   gene model=Glyma09g08140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGATGGCCATCATTAGCAAACTATACTGTTCATCTTCTCAGACGGTGCTTGGGGTCAGGAAAAGACCTCATGTGGTGAATGGAGGGGGTTTTGTGGTCACGGATTGTAGTGGCCAGAGGGTTGTTTTCAGAGTTGATGGTTGTGGGATTCATGGCACTAAGGGACAGTTGATTCTAAGAGATGGGGAAGGAGATGCTTTACTTCTCATGCGTCGAAAGGGAGGCATGGTTGAAGCCCTTAGCATTTACAAGAAGTGGAATGGTTATAGTGTAAACTATGAAGGATTGCAGAGCCTGGTTTTCAGCTTGAAAGAGCCCAACAGTTGTTGTTTGGTTAGGAACAATGCCATTAGAATCTCCATTGAGCCAAGGAATGCTAGTAACAAGGGCTGGGACTTTGAGGTAAGGGGTTACTTCCCCGATAGAAGTTGCAGCATTGTTGACGTTAGAGGCAACGTAATAGCACAGGTTGGGGTGAACAAGGAAGTGGAGAAATTGATGGAAAGCAAGGATTTGTATCATGTTGTTGTGAAACCAGGGATCGATCAAGCGTTTGTTTTTGGAGTCATTGCCATCCTTGACAACATTTATGGCGAATCCACGCACTGCTGA
Predicted protein sequences of Glyma09g08140
>Glyma09g08140.1   sequence type=predicted peptide   gene model=Glyma09g08140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMMAIISKLYCSSSQTVLGVRKRPHVVNGGGFVVTDCSGQRVVFRVDGCGIHGTKGQLILRDGEGDALLLMRRKGGMVEALSIYKKWNGYSVNYEGLQSLVFSLKEPNSCCLVRNNAIRISIEPRNASNKGWDFEVRGYFPDRSCSIVDVRGNVIAQVGVNKEVEKLMESKDLYHVVVKPGIDQAFVFGVIAILDNIYGESTHC*






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