Glyma09g08110 - SoyBase

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Report for Sequence Feature Glyma09g08110

Feature Type:	gene_model
Chromosome:	Gm09
Start:	7156879
stop:	7160762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05940	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:2287514-2289270 REVERSE LENGTH=462	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009625	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to insect	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF685	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Glycine max RepID=C6ZRQ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L1Q5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L1Q5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08110

Paralog	Evidence	Comments
Glyma15g19600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g069900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g08110

Limit To All Plant Sequences

>Glyma09g08110.1   sequence type=CDS   gene model=Glyma09g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTTATGAAAATCCTATGGAAATCACTCTTCCCCGGTTGTTACAAGGGTGAATATCCCTCTCCAAAGCCAAAGAAAGTGGTGGCTACAAAGCCAAATTCTTCACACAGGATTTCTGTGACGGATTTGAGTTATCCAAGCACGACTCTTTCGGAGGATCTCTCTATTTCTCTAGCGGGGACCAACCTCCATGTTTTCTCAATCGCTGAGCTCAAGATTATCACTCAACAATTCTCTTCTAGCAATTTTCTTGGAGAAGGTGGGTTCGGACCGGTTCATAAGGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCCGTGGCTGTTAAGCTCTTGAACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGACTGAGGTTGTTTTTCTGGGGCAACTTAGGCATCCACATCTCGTGAAGCTGATAGGATACTGTTGTGAAGAAGAACACAGGGTTTTGGTGTATGAATATTTACCAAGAGGAAGCTTGGAGAATCAATTATTTAGAAGATTCTCAGCATCACTTCCATGGTCAACGAGAATGAAAATTGCTGTTGGAGCTGCGAAGGGCCTAGCCTTTCTTCATGAGGCTGAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGACTCTGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACGCAGCTCCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTAGTGCTATTGGAGCTGTTAACAGGAAGAAGGTCAGTGGACAAAAACCGGCCTCCAAGGGAGCAAAACCTAGTGGAGTGGGCAAGGCCAATGCTAAACGATTCAAGGAAACTCAGCAGAATAATGGATCCTAGACTTGAAGGCCAATATTCAGAAATGGGAACAAAAAAAGCAGCAGCATTGGCATACCAATGCCTCAGCCACAGGCCAAGGAGCAGACCCTCAATGAGCACAGTGGTCAAGACCCTTGAGCCACTTCAAGATTTTGATGACATTCCAATTGGAACATTTGTGTACACAGCTCCACCAGATAATAATAATGAAGTGCAGCATAAGGATCAATGTGAGACACCTAAGAGGAGGGAAAATAATAATAATGGTCACAATATTCATAGGAATGGCCACAGGCATCATCCACTTAAATCCCCCAAGGCCCCAAGGTCACAATCACAATCACAATCACAGTCACATTTACGTCCAAATGACCACAAACACAGAAATGGAAGAGGAAGTGGACCAAATTCTCCTCCATCACATGTGAAAATAATTAGGCCAGGAGTTATTGCTTGTTAG

Predicted protein sequences of Glyma09g08110

Limit To All Plant Sequences

>Glyma09g08110.1   sequence type=predicted peptide   gene model=Glyma09g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLMKILWKSLFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTLSEDLSISLAGTNLHVFSIAELKIITQQFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLNLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRVLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLSRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKTLEPLQDFDDIPIGTFVYTAPPDNNNEVQHKDQCETPKRRENNNNGHNIHRNGHRHHPLKSPKAPRSQSQSQSQSHLRPNDHKHRNGRGSGPNSPPSHVKIIRPGVIAC*

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