Glyma09g08100 - SoyBase

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Report for Sequence Feature Glyma09g08100

Feature Type:	gene_model
Chromosome:	Gm09
Start:	7129001
stop:	7133878
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g08100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45310	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr3:16628704-16630473 REVERSE LENGTH=358	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG1543	KOG	Cysteine proteinase Cathepsin L	JGI		ISS
PTHR12411	Panther	CYSTEINE PROTEASE FAMILY C1-RELATED	JGI		ISS
PTHR12411:SF50	Panther	gb def: granule-biosynthesis induced protease gip1p [tetrahymena thermophila]	JGI		ISS
PF00112	PFAM	Papain family cysteine protease	JGI		ISS
PF08246	PFAM	Cathepsin propeptide inhibitor domain (I29)	JGI		ISS
UniRef100_I1L1Q3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1Q3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q41057	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine protease n=1 Tax=Pisum sativum RepID=Q41057_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g08100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g08100

Paralog	Evidence	Comments
Glyma15g19580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g08100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g069800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g08100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g08100

Limit To All Plant Sequences

>Glyma09g08100.2   sequence type=transcript   gene model=Glyma09g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATATCAAAACCAAGAAGACAGGATGGTTACTGTGGTCCCGAGACAAGTAATATTTAATCAATACAATGCTATCATACAAACATAACATAACCCCATTGAAGATTCCACAACAGTGGGAGGGAGATCCAAAAAGAGAGAGTGGAAAAGATGGCGCGGTTGATCACAGTGGTGTGGTGCGCGGTGGCGGTGCTATTATGCGCCGCGGCCGGTGCGTCGTGGGTGGAGGAGGCGGCGAACCCGATACGAATGGTGTCTGGCGTGGAGGCGGAGGTGGTTCGGGTGATCGGGGAGTGCCGGCGTGCGTTGAAGTTTGCTAGGTTCGTGAGCAGGTTCGGGAAGAGTTACCAAAGCGAGGAAGAGATGAAGGAGAGGTACGAGATATTCTCGCAGAATCTCAGGTTCATCCGCTCCCACAACAAGAAGCGTTTGCCCTATACTCTCTCTGTTAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGAGCTGCCCAAAATTGCTCTGCCACTCTTAACGGCAACCACAAGCTCACCGATGCTGTTCTTCCTCCAACGAAAGACTGGAGAAAAGAAGGTATAGTGAGTTCAGTTAAAGATCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAAGCATTTGGGAAGAGTATCTCTCTTTCTGAGCAGCAGCTAGTGGACTGTGCTGGCCCTTTCAACAACTTTGGCTGCCATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTAGAGACAGAGGAAGCATATCCCTACACAGGAAAAGATGGTGTCTGCAAATTCTCAGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTGAATATCACCTTGGGTGCTGAAGATGAACTAAAACATGCAGTTGCATTTGTTCGGCCAGTTAGTGTGGCCTTTCAGGTGGTGAATGGGTTCCATTTCTACGAGAATGGAGTTTTCACTAGTGACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCCGTTCTTGCTGTTGGATATGGAGTTGAAAATGGTGTCCCATATTGGCTCATAAAAAATTCATGGGGAGAAAGCTGGGGTGAAAATGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGTGGTGTTGCAACTTGTGCATCTTATCCAATTGTGGCATAAATTGCATAACAATATGGTCCCTGGTGACTACCACCTTGTCATGCTTCAGAGTTTAGAGCGTATTGCTGATGCCAGTATTGATGAATGATGATTAAAGATAAGTGTAATTGTATGATGAAAATTGCTCCTAGTTGGGTTGGCATGATGTATAAAATAAGCTAGAAGTTGTTGTAAATCACATAAGTATATTATGGCCTTAATTGTGTGTATCACAGACATAATAACGATCATATATTGATAGTTCATAGTTACATATTGTATTGTATTGATGCTCCCGCTTCAAATATCAGTTATAAGATAGCATTGTCTTTGCTACTTTGCACTATGCAACATTATTACTTCTTTCGGTTTAATTTATTTGTCACTTGTAAAATATGTTAGCATCTCAAATTATTGTGCTTTTAAAGTATTAAAAAAACATTAA

Coding sequences of Glyma09g08100

Limit To All Plant Sequences

>Glyma09g08100.1   sequence type=CDS   gene model=Glyma09g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGGTTGATCACAGTGGTGTGGTGCGCGGTGGCGGTGCTATTATGCGCCGCGGCCGGTGCGTCGTGGGTGGAGGAGGCGGCGAACCCGATACGAATGGTGTCTGGCGTGGAGGCGGAGGTGGTTCGGGTGATCGGGGAGTGCCGGCGTGCGTTGAAGTTTGCTAGGTTCGTGAGCAGGTTCGGGAAGAGTTACCAAAGCGAGGAAGAGATGAAGGAGAGGTACGAGATATTCTCGCAGAATCTCAGGTTCATCCGCTCCCACAACAAGAAGCGTTTGCCCTATACTCTCTCTGTTAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGAGCTGCCCAAAATTGCTCTGCCACTCTTAACGGCAACCACAAGCTCACCGATGCTGTTCTTCCTCCAACGAAAGACTGGAGAAAAGAAGGTATAGTGAGTTCAGTTAAAGATCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAAGCATTTGGGAAGAGTATCTCTCTTTCTGAGCAGCAGCTAGTGGACTGTGCTGGCCCTTTCAACAACTTTGGCTGCCATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTAGAGACAGAGGAAGCATATCCCTACACAGGAAAAGATGGTGTCTGCAAATTCTCAGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTGAATATCACCTTGGGTGCTGAAGATGAACTAAAACATGCAGTTGCATTTGTTCGGCCAGTTAGTGTGGCCTTTCAGGTGGTGAATGGGTTCCATTTCTACGAGAATGGAGTTTTCACTAGTGACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCCGTTCTTGCTGTTGGATATGGAGTTGAAAATGGTGTCCCATATTGGCTCATAAAAAATTCATGGGGAGAAAGCTGGGGTGAAAATGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGTGGTATGTATACATATACAACCTCCCACTTACCCGAGAAATTATTAGGTGATCCTGTTCCAATCAATGATTATGCAACACATTTAAATTTCTCCTACAGAACCCTGCCCCCAACAAATACCAAACCTAAAAATAACTTCAATCAATTTCCCTTTACAGGTTTGATGATTGGCATAGTAAAGGGCTTCAGATTTTAA

>Glyma09g08100.2   sequence type=CDS   gene model=Glyma09g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGGTTGATCACAGTGGTGTGGTGCGCGGTGGCGGTGCTATTATGCGCCGCGGCCGGTGCGTCGTGGGTGGAGGAGGCGGCGAACCCGATACGAATGGTGTCTGGCGTGGAGGCGGAGGTGGTTCGGGTGATCGGGGAGTGCCGGCGTGCGTTGAAGTTTGCTAGGTTCGTGAGCAGGTTCGGGAAGAGTTACCAAAGCGAGGAAGAGATGAAGGAGAGGTACGAGATATTCTCGCAGAATCTCAGGTTCATCCGCTCCCACAACAAGAAGCGTTTGCCCTATACTCTCTCTGTTAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGAGCTGCCCAAAATTGCTCTGCCACTCTTAACGGCAACCACAAGCTCACCGATGCTGTTCTTCCTCCAACGAAAGACTGGAGAAAAGAAGGTATAGTGAGTTCAGTTAAAGATCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAAGCATTTGGGAAGAGTATCTCTCTTTCTGAGCAGCAGCTAGTGGACTGTGCTGGCCCTTTCAACAACTTTGGCTGCCATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTAGAGACAGAGGAAGCATATCCCTACACAGGAAAAGATGGTGTCTGCAAATTCTCAGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTGAATATCACCTTGGGTGCTGAAGATGAACTAAAACATGCAGTTGCATTTGTTCGGCCAGTTAGTGTGGCCTTTCAGGTGGTGAATGGGTTCCATTTCTACGAGAATGGAGTTTTCACTAGTGACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCCGTTCTTGCTGTTGGATATGGAGTTGAAAATGGTGTCCCATATTGGCTCATAAAAAATTCATGGGGAGAAAGCTGGGGTGAAAATGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGTGGTGTTGCAACTTGTGCATCTTATCCAATTGTGGCATAA

Predicted protein sequences of Glyma09g08100

Limit To All Plant Sequences

>Glyma09g08100.1   sequence type=predicted peptide   gene model=Glyma09g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARLITVVWCAVAVLLCAAAGASWVEEAANPIRMVSGVEAEVVRVIGECRRALKFARFVSRFGKSYQSEEEMKERYEIFSQNLRFIRSHNKKRLPYTLSVNHFADWTWEEFKRHRLGAAQNCSATLNGNHKLTDAVLPPTKDWRKEGIVSSVKDQGSCGSCWTFSTTGALEAAYAQAFGKSISLSEQQLVDCAGPFNNFGCHGGLPSQAFEYIKYNGGLETEEAYPYTGKDGVCKFSAENVAVQVLDSVNITLGAEDELKHAVAFVRPVSVAFQVVNGFHFYENGVFTSDTCGSTSQDVNHAVLAVGYGVENGVPYWLIKNSWGESWGENGYFKMELGKNMCGMYTYTTSHLPEKLLGDPVPINDYATHLNFSYRTLPPTNTKPKNNFNQFPFTGLMIGIVKGFRF*

>Glyma09g08100.2   sequence type=predicted peptide   gene model=Glyma09g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARLITVVWCAVAVLLCAAAGASWVEEAANPIRMVSGVEAEVVRVIGECRRALKFARFVSRFGKSYQSEEEMKERYEIFSQNLRFIRSHNKKRLPYTLSVNHFADWTWEEFKRHRLGAAQNCSATLNGNHKLTDAVLPPTKDWRKEGIVSSVKDQGSCGSCWTFSTTGALEAAYAQAFGKSISLSEQQLVDCAGPFNNFGCHGGLPSQAFEYIKYNGGLETEEAYPYTGKDGVCKFSAENVAVQVLDSVNITLGAEDELKHAVAFVRPVSVAFQVVNGFHFYENGVFTSDTCGSTSQDVNHAVLAVGYGVENGVPYWLIKNSWGESWGENGYFKMELGKNMCGVATCASYPIVA*

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