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Report for Sequence Feature Glyma09g07930

Feature Type:gene_model
Chromosome:Gm09
Start:6912607
stop:6920632
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g07930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20540AT Annotation by Michelle Graham. TAIR10: BREVIS RADIX-like 4 | chr5:6947943-6951760 FORWARD LENGTH=384 SoyBaseE_val: 1.00E-144ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR22870Panther REGULATOR OF CHROMOSOME CONDENSATION JGI ISS
PTHR22870:SF36Panther SUBFAMILY NOT NAMED JGI ISS
PF08381PFAM Disease resistance/zinc finger/chromosome condensation-like region JGI ISS
UniRef100_B9S5S9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5S9_RICCO SoyBaseE_val: 5.00E-152ISS
UniRef100_I1L1N4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1N4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g07930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g07930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g068100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g07930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g07930
>Glyma09g07930.1   sequence type=CDS   gene model=Glyma09g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTACGTGCATAGCACGTCCGAAGAAACTCGTCGGCGACTCGGCAGCGAGCGAGGATCCGAGTTCGCGGGGAGTGAAGTCGCTGACGGGTCAGCTGAAGGAGATGGCGCTGAAGGCGTCGGGGGCGTACAAGCAGTGCGGCGGGCCGTGCGCGACGGCGCCGCCGAGTCGAGTGAGTCGCGGCGGCGGAACCGAGTTGGACTCGGAGTCGTCGTCGTCGTCTTCGTCTCGGCGGCGGTGGGGGAAGGAGCTGGAGGCACGGCTGAAGGGGATATCGAGCGGGGAGGGGACGCCGAGCTCGAGCGGGAGGAGGGTGGTGCTGCTGCTTGAAGACGAGGAAGAGCCGAAGGAGTGGGTGGCGCAGGTTGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTTCCCCGTGGCGGGAACCATCTCAAACGGATACGATTCAGCCGTGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTGATGGAACTTTACAATGTGCAAAGGCTTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAGAGTTCAAAGCGTGAATCAATAGAAGATTTCCCAGTGACACCTCCACTGAGCAGGGAAAGGCCACCATGTAACTTATTCCGTGCAGGAGGAGGAGGGATGGGAATGGGGTACTCATCCTCAGATTCATTTGATCATCACTCAATGCAATCATCCCGGCATTACTATGACCCCAATGACGTTAACTCAACCCCAAAAGCTTCTTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCATCATCAATGGATGTTGATGCTTCCATAAGAAGTAGCTCTTCTAGAGAAGCTGATCGCTCTGGGGACCTGTCAATCAGCAATGCCAGTGACCTTGACACTGAATGGGTTGAGCAGGATGAGCCTGGGGTTTACATCACCATCAGAGCTCTCCCAGGTGGCAAAAAGGAGCTCAGACGAGTCAGGTTCAGTCGAGAAAAGTTTGGTGAGATGCATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA
Predicted protein sequences of Glyma09g07930
>Glyma09g07930.1   sequence type=predicted peptide   gene model=Glyma09g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTCIARPKKLVGDSAASEDPSSRGVKSLTGQLKEMALKASGAYKQCGGPCATAPPSRVSRGGGTELDSESSSSSSSRRRWGKELEARLKGISSGEGTPSSSGRRVVLLLEDEEEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEDFPVTPPLSRERPPCNLFRAGGGGMGMGYSSSDSFDHHSMQSSRHYYDPNDVNSTPKASSTISAAAKTDISSSMDVDASIRSSSSREADRSGDLSISNASDLDTEWVEQDEPGVYITIRALPGGKKELRRVRFSREKFGEMHARLWWEENRARIHEQYL*






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