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Report for Sequence Feature Glyma09g07330

Feature Type:gene_model
Chromosome:Gm09
Start:6169427
stop:6174191
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g07330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G34060AT Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:12396561-12398299 REVERSE LENGTH=463 SoyBaseE_val: 0ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016846GO-mf Annotation by Michelle Graham. GO Molecular Function: carbon-sulfur lyase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF162Panther SUBFAMILY NOT NAMED JGI ISS
PF04863PFAM Alliinase EGF-like domain JGI ISS
PF04864PFAM Allinase JGI ISS
UniRef100_B9SED1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alliin lyase, putative n=1 Tax=Ricinus communis RepID=B9SED1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1L1I7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L1I7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g07330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g07330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g162400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g07330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g07330
>Glyma09g07330.1   sequence type=CDS   gene model=Glyma09g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAAAGAAACAAGTCCAGTGAATTTAGCATTCATTTTAATATTATTATGTGCATCAAACGTGTTTGTTTGTAGGGGAGAATGGGAGCCAACTTGGAGCAGTAGAGCTGCAGAAGAAGCAGAGGCTGTGGCAGCCATACCATGCTCAGGACATGGAAGAGCCTACTTAGATGGTCTTATTCTAAAAGGCCATGAACCTGTTTGTGAGTGCAATCCATGCTACGGTGGATCTGATTGCTCCAAGTTATTATCTGATTGTGCTGCTAATGCTGGAAGTGGGGATCCATATTTTATGGAGCCATTTTGGATGCGACATGCAGCAGGTAGTGCCATTTTAGTATCAGGATGGCATAGAATGGGTTATTCTTATAGTGATGGATCATACATCTCACAACTATTGGTTGAGTACATAAAAAAACTTCATGGCATCGTTGGGAATGCAATCACCGAAGGAAAGTACATCGTATTTGGAAGTGGCTCAACTCAACTTCTCAATGCTGCTGTTTATGCCTTGTCTCCCAACTCTTCAATGTCTCCAGCAAAAGTCGTAGCCACAGCACCATATTACCCGGTATATCGAACACAGACACAATTTTTCAATTCTAGGGATTTTAGTTATGAAGGAGAAACATCCTCGTGGAAAAACAAGACAGATAAAAACTCTATATTTATTGAGTTTGTTACTTCACCGAACAATCCAGATGGAAAATTGACTAAGGAAGTTCTTGAAGGTCCTAATGTAAAATCCATTTATGATCGAGCCTACTATTGGCCACATTTCACTGCTATTCCTTCACCAGCAGACGATGATCTTATGATATTTACAATTTCTAAGCTCACAGGCCATGCTGGGAGTAGATTTGGATGGGCAATTGTAAAAGATGAGGCAGTATATGAAAAGATGTTGACATATATGGATATGAACACCATGGGAGTTTCCCGTGAGGCTCAGCTGAGAGCTTTAAAGCTTTTGGACGTGGCTCTTGAAGGAGATGGAAAAGAAATATTCCAATTTGCATATTCAACCATGAGAGATCGTTGGATAAGGTTGAAAGAAATCATATCTAAAACAAAACGGTTTTCTCTACAGAAAATTTCTTCCCAATACTGCACCTTTTTCAAGAGGGACAGAGACGCTTCACCAGCTTACGCTTGGTTAAAGTGTGAGAGACAACAAGACAATAATTGCTATGAAATCCTTGAAGCTGCTGGCATCAATGGCCGTGAAGGAAGTCTCTATAGTGCCGATAATCGTTACGTGCGTCTCAGTCTCATTAGGAGCCAAGATGATTTTGAGATACTCATAAACAAGCTCAAAATTCTTGTTTCTAAGGAATAG
Predicted protein sequences of Glyma09g07330
>Glyma09g07330.1   sequence type=predicted peptide   gene model=Glyma09g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKETSPVNLAFILILLCASNVFVCRGEWEPTWSSRAAEEAEAVAAIPCSGHGRAYLDGLILKGHEPVCECNPCYGGSDCSKLLSDCAANAGSGDPYFMEPFWMRHAAGSAILVSGWHRMGYSYSDGSYISQLLVEYIKKLHGIVGNAITEGKYIVFGSGSTQLLNAAVYALSPNSSMSPAKVVATAPYYPVYRTQTQFFNSRDFSYEGETSSWKNKTDKNSIFIEFVTSPNNPDGKLTKEVLEGPNVKSIYDRAYYWPHFTAIPSPADDDLMIFTISKLTGHAGSRFGWAIVKDEAVYEKMLTYMDMNTMGVSREAQLRALKLLDVALEGDGKEIFQFAYSTMRDRWIRLKEIISKTKRFSLQKISSQYCTFFKRDRDASPAYAWLKCERQQDNNCYEILEAAGINGREGSLYSADNRYVRLSLIRSQDDFEILINKLKILVSKE*






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