Glyma09g07290 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g07290

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6143432
stop:	6155078
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g07290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62670	AT	Annotation by Michelle Graham. TAIR10: rna processing factor 2 \| chr1:23204773-23206665 REVERSE LENGTH=630	SoyBase	E_val: 4.00E-137	ISS
GO:0000966	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA 5'-end processing	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KKP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KKP9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L1I3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1I3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g07290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g07290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g162800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g07290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g07290

Limit To All Plant Sequences

>Glyma09g07290.3   sequence type=transcript   gene model=Glyma09g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAAAAAAAGTGATTACCTAAAGATAAGCTATCACGTCAAATTTAGGGTATAAACATAATCAAAGCTGAATATCTCAATTTTATTGTTAGCGCATTGCCCTCTATCACTTCATGCCTCGAATCGGAGCAAACTGAGCTTTGATCTCTGTTTCACATTAACCAACCAAACAAACACAATCCATTCAACACAACAATGTCATTCTCATTCTCATTGTCAAGAAGGTTAAGCTCTTCTCCCTCTCTTCCCATTCCCAACTTTCCTCCTTTTCTTCCAAACCCCACTTTCCCTCTTTGCTTTCACTCTCAGCCTCCATCCATTGACAATGTTGTTGATGATACTGTTTCCCAGTTCAGTGGCATGCTCCTTGTTCGTCATACCCCACCCATCATCGAATTTAACAAGATTTTAGGATCCCTTGCAAAGATGAAGCAGTATCTTACTGCCATTTCCCTTTCTAAACAAATGGAAGTCAAAGGAATCAGGGCAAATTTTGTTACTTTGAACATCCTCATCAATTGTTTCTGCCACTTGGGCCAAATGGCCTTTTCTTTTTCTGTATTGGGCAAAATTCTAAAATTAGGTTATCAGCCGGATACCATAACCTTGAATACACTCATGAAAGGTCTGTGTCTCAAGGGTGAGGTCAAGAAATCACTGCACTTTCATGACAAGGTCGTAGCACAAGGATTTCAGATGGACCATGTTAGTTACGGGACCCTGCTCAATGGACTATGTAAAATAGGAGAAACGAGATGTGCCGTCAAGTTGCTGAGAATGATTGAAGACAGATCAACTAGGCCTAATGTGGTAATGTACAACACCATCATTGATGGCTTATGCAAAGATAAACTTGTAAACGAGGCTTATGATTTATATTCTGAAATGGATGCTAGGGGAATTTTTCCTGATGCTATCACTTACACTACTCTAATATATGGTTTTTGCCTTTTGGGTCAGTTAATGGGAGCATTCAGTTTATTAGATGAAATGATATTGAAGAACATCAACCCGGGTGTTTATATCTATAATATATTGATTAATGCATTATGTAAAGAAGGAAATGTGAAAGAAGCCAAAAATTTATTAGCTGTGATGACGAAAGAAGGAATAAAACCTGGTGTTGTTACTTATAGTACTTTAATGGATGGGTATTGTTTAGTTGGTGAAGTGCAGAATGCAAAACAGATATTCCACGCTATGGTGCAAATGGGAGTAAATCCTAATGTGTACAGCTACAATATAATGATTAATGGATTATGTAAGTGTAAAAGGGTGGATGAGGCCATGAATCTCCTAAGAGAAATGCTGCATAAAAATATGGTTCCTGATACAGTGACGTACAATTCTCTTATTGATGGGTTGTGCAAATCAGGGAGAATTACTTCTGCTTTGAATCTTATGAATGAGATGCACCACAGAGGTCAACCAGCTGATGTAGTCACCTACACTTCCTTATTAGATGCTTTATGCAAAAACCAAAACCTTGACAAGGCAACTGCACTATTCATGAAAATGAAGGAACGGGGAATTCAGCCAACTATGTACACATACACGGCACTTATTGATGGATTATGTAAAGGTGGAAGACTTAAGAATGCGCAAGAGCTTTTTCAACATCTCTTGGTTAAAGGCTGTTGTATAGATGTCTGGACATATACTGTCATGATCAGTGGGCTTTGTAAAGAGGGCATGTTTGATGAAGCTTTGGCCATTAAGTCAAAAATGGAAGACAATGGTTGCATCCCTAATGCTGTAACTTTTGAAATCATTATTCGTTCTCTTTTTGAGAAGGATGAAAATGATAAGGCCGAGAAACTTCTCCATGAAATGATTGCTAAAGGCCTATTAGGTTTTAGGAATTTTCATGGGGAGTGATCTCCAGATACAAATTAAGTTATTGTTAATTTTCATGGTCATTGCTGATAAATTAATGAAA

Coding sequences of Glyma09g07290

Limit To All Plant Sequences

>Glyma09g07290.2   sequence type=CDS   gene model=Glyma09g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCTCATTCTCATTGTCAAGAAGGTTAAGCTCTTCTCCCTCTCTTCCCATTCCCAACTTTCCTCCTTTTCTTCCAAACCCCACTTTCCCTCTTTGCTTTCACTCTCAGCCTCCATCCATTGACAATGTTGTTGATGATACTGTTTCCCAGTTCAGTGGCATGCTCCTTGTTCGTCATACCCCACCCATCATCGAATTTAACAAGATTTTAGGATCCCTTGCAAAGATGAAGCAGTATCTTACTGCCATTTCCCTTTCTAAACAAATGGAAGTCAAAGGAATCAGGGCAAATTTTGTTACTTTGAACATCCTCATCAATTGTTTCTGCCACTTGGGCCAAATGGCCTTTTCTTTTTCTGTATTGGGCAAAATTCTAAAATTAGGTTATCAGCCGGATACCATAACCTTGAATACACTCATGAAAGGTCTGTGTCTCAAGGGTGAGGTCAAGAAATCACTGCACTTTCATGACAAGGTCGTAGCACAAGGATTTCAGATGGACCATGTTAGTTACGGGACCCTGCTCAATGGACTATGTAAAATAGGAGAAACGAGATGTGCCGTCAAGTTGCTGAGAATGATTGAAGACAGATCAACTAGGCCTAATGTGGTAATGTACAACACCATCATTGATGGCTTATGCAAAGATAAACTTGTAAACGAGGCTTATGATTTATATTCTGAAATGGATGCTAGGGGAATTTTTCCTGATGCTATCACTTACACTACTCTAATATATGGTTTTTGCCTTTTGGGTCAGTTAATGGGAGCATTCAGTTTATTAGATGAAATGATATTGAAGAACATCAACCCGGGTGTTTATATCTATAATATATTGATTAATGCATTATGTAAAGAAGGAAATGTGAAAGAAGCCAAAAATTTATTAGCTGTGATGACGAAAGAAGGAATAAAACCTGGTGTTGTTACTTATAGTACTTTAATGGATGGGTATTGTTTAGTTGGTGAAGTGCAGAATGCAAAACAGATATTCCACGCTATGGTGCAAATGGGAGTAAATCCTAATGTGTACAGCTACAATATAATGATTAATGGATTATGTAAGTGTAAAAGGGTGGATGAGGCCATGAATCTCCTAAGAGAAATGCTGCATAAAAATATGGTTCCTGATACAGTGACGTACAATTCTCTTATTGATGGGTTGTGCAAATCAGGGAGAATTACTTCTGCTTTGAATCTTATGAATGAGATGCACCACAGAGGTCAACCAGCTGATGTAGTCACCTACACTTCCTTATTAGATGCTTTATGCAAAAACCAAAACCTTGACAAGGCAACTGCACTATTCATGAAAATGAAGGAACGGGGAATTCAGCCAACTATGTACACATACACGGCACTTATTGATGGATTATGTAAAGGTGGAAGACTTAAGAATGCGCAAGAGCTTTTTCAACATCTCTTGGTTAAAGGCTGTTGTATAGATGTCTGGACATATACTGTCATGATCAGTGGGCTTTGTAAAGAGGGCATGTTTGATGAAGCTTTGGCCATTAAGTCAAAAATGGAAGACAATGGTTGCATCCCTAATGCTGTAACTTTTGAAATCATTATTCGTTCTCTTTTTGAGAAGGATGAAAATGATAAGGCCGAGAAACTTCTCCATGAAATGATTGCTAAAGGCCTATTAGGTTTTAGGAATTTTCATGGGGAGTGA

>Glyma09g07290.3   sequence type=CDS   gene model=Glyma09g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCTCATTCTCATTGTCAAGAAGGTTAAGCTCTTCTCCCTCTCTTCCCATTCCCAACTTTCCTCCTTTTCTTCCAAACCCCACTTTCCCTCTTTGCTTTCACTCTCAGCCTCCATCCATTGACAATGTTGTTGATGATACTGTTTCCCAGTTCAGTGGCATGCTCCTTGTTCGTCATACCCCACCCATCATCGAATTTAACAAGATTTTAGGATCCCTTGCAAAGATGAAGCAGTATCTTACTGCCATTTCCCTTTCTAAACAAATGGAAGTCAAAGGAATCAGGGCAAATTTTGTTACTTTGAACATCCTCATCAATTGTTTCTGCCACTTGGGCCAAATGGCCTTTTCTTTTTCTGTATTGGGCAAAATTCTAAAATTAGGTTATCAGCCGGATACCATAACCTTGAATACACTCATGAAAGGTCTGTGTCTCAAGGGTGAGGTCAAGAAATCACTGCACTTTCATGACAAGGTCGTAGCACAAGGATTTCAGATGGACCATGTTAGTTACGGGACCCTGCTCAATGGACTATGTAAAATAGGAGAAACGAGATGTGCCGTCAAGTTGCTGAGAATGATTGAAGACAGATCAACTAGGCCTAATGTGGTAATGTACAACACCATCATTGATGGCTTATGCAAAGATAAACTTGTAAACGAGGCTTATGATTTATATTCTGAAATGGATGCTAGGGGAATTTTTCCTGATGCTATCACTTACACTACTCTAATATATGGTTTTTGCCTTTTGGGTCAGTTAATGGGAGCATTCAGTTTATTAGATGAAATGATATTGAAGAACATCAACCCGGGTGTTTATATCTATAATATATTGATTAATGCATTATGTAAAGAAGGAAATGTGAAAGAAGCCAAAAATTTATTAGCTGTGATGACGAAAGAAGGAATAAAACCTGGTGTTGTTACTTATAGTACTTTAATGGATGGGTATTGTTTAGTTGGTGAAGTGCAGAATGCAAAACAGATATTCCACGCTATGGTGCAAATGGGAGTAAATCCTAATGTGTACAGCTACAATATAATGATTAATGGATTATGTAAGTGTAAAAGGGTGGATGAGGCCATGAATCTCCTAAGAGAAATGCTGCATAAAAATATGGTTCCTGATACAGTGACGTACAATTCTCTTATTGATGGGTTGTGCAAATCAGGGAGAATTACTTCTGCTTTGAATCTTATGAATGAGATGCACCACAGAGGTCAACCAGCTGATGTAGTCACCTACACTTCCTTATTAGATGCTTTATGCAAAAACCAAAACCTTGACAAGGCAACTGCACTATTCATGAAAATGAAGGAACGGGGAATTCAGCCAACTATGTACACATACACGGCACTTATTGATGGATTATGTAAAGGTGGAAGACTTAAGAATGCGCAAGAGCTTTTTCAACATCTCTTGGTTAAAGGCTGTTGTATAGATGTCTGGACATATACTGTCATGATCAGTGGGCTTTGTAAAGAGGGCATGTTTGATGAAGCTTTGGCCATTAAGTCAAAAATGGAAGACAATGGTTGCATCCCTAATGCTGTAACTTTTGAAATCATTATTCGTTCTCTTTTTGAGAAGGATGAAAATGATAAGGCCGAGAAACTTCTCCATGAAATGATTGCTAAAGGCCTATTAGGTTTTAGGAATTTTCATGGGGAGTGA

Predicted protein sequences of Glyma09g07290

Limit To All Plant Sequences

>Glyma09g07290.2   sequence type=predicted peptide   gene model=Glyma09g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFSFSLSRRLSSSPSLPIPNFPPFLPNPTFPLCFHSQPPSIDNVVDDTVSQFSGMLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGFRNFHGE*

>Glyma09g07290.3   sequence type=predicted peptide   gene model=Glyma09g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFSFSLSRRLSSSPSLPIPNFPPFLPNPTFPLCFHSQPPSIDNVVDDTVSQFSGMLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGFRNFHGE*

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