Glyma09g07250 - SoyBase

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Report for Sequence Feature Glyma09g07250

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6128927
stop:	6131489
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g07250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22470	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr3:7966066-7967925 REVERSE LENGTH=619	SoyBase	E_val: 4.00E-139	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KPR4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KPR4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L1I2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L1I2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g07250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g07250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g163100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g07250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g07250

Limit To All Plant Sequences

>Glyma09g07250.1   sequence type=CDS   gene model=Glyma09g07250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCTCGAGAAGGTTAAGCTCTTCTCTCTCTCCTTCCATTCCCAAATTTCCTCCTTTTCTTCCAAATCCCACTTTCCTTCCTTGCTTTCATTCTCAGCCTTCATCCATTGATAATATTGTTGTTGATGCTGTTTGTCAGTTCAATAGCATGCTCCTTGTGCGTGATACCCCACCCATCATGGAATTTAACAAGATTGTGGGATCTCTTGTAAAGATGAAGCACTATCCCACTGCCATTTCTCTTTTTAAACAAATGCAAGTCAAAGGAATCGAGCCAGATCTTTTTACTTTGAACATCCTCATCAATTGTTTCTGCCACTTGGGCCAAATGACCTTTTCTTTTACTGTATTGGGCAAAATTCTAAAATTAGGTTATCAGCCGAATACCATAACCTTGAATACACTCATGAAAGGTCTGTGTCTCAAGGGTGAGGTCAAGAAATCACTGCACTTTCATGACAAGGTCGTAGCACAAGGATTTCAGATGGACCAGGTTAGTTACGCAACCCTGCTCAATGGACTATGTAAAATAGGAGAAACGAGAAGTGCCCTCAAGTTGCTGAGAATGATTGAAGACAGATCAACTAGGCCTAATGTGGTAATGTACAACACCATCATTGATGGCTTATGCAAAGATAAACTTGTAAACGAGGCATATGATTTATATTCTGAAATGGATGCCAGAGGAATTTTTCCTAATGTTATCACTTACAGTACTCTAATCTATGGCTTTTGCCTTGCGGGTCAGTTAATGGAAGCATTTGGTTTATTAAATGAAATGATATTGAAGAACATCAACCCGAATGTCTATACCTATACTATATTGATGGATGCATTATGTAAAGAAGGAAAGGTGAAAGAAGCCAAAAATTTATTAGCTGTGATGACGAAAGAAGGAGTAAAACCTAATGTTGTTTCTTATAATACTTTAATGGATGGGTATTGTTTAATTGGTGAAGTGCAGAATGCAAAACAAATGTTTCACACTATGGTCCAAAAGGGAGTAAATCCTAATGTTTACAGCTACAATATAATGATTGATAGATTATGTAAGAGTAAAAGGGTGGATGAGGCCATGAATCTCCTAAGAGAAGTGTTGCATAAAAACATGGTTCCTAATACAGTGACCTACAGTTCTCTTATTGATGGTTTCTGCAAATTAGGGAGAATTACTTCTGCTTTGGATCTTTTGAAGGAGATGTACCACAGAGGTCAACCAGCTGATGTAGTCACCTACACTTCCTTATTAGATGCTTTATGCAAAAACCAAAACCTTGACAAGGCAACTGCACTATTCATGAAAATGAAGGAGCGGGGAATTCAGCCAAATAAGTACACATACACGGCACTTATTGATGGATTATGTAAAGGTGGAAGACATAAGAATGCACAAAAACTTTTTCAACATCTCTTGGTTAAAGGCTGTCGTATAAATGTCTGGACATATAATGTCATGATCAGTGGGCTTTGTAAAGAGGGCATGCTTGATGAAGCATTGGCCATGAAGTCAAAAATGGAAGAGAATGGTTGCATCCCCGATGCTGTAACTTTTGAAATTATTATTCGTTCTCTGTTTGAGAAGGATCAAAATGATAAGGCTGAGAAACTTCTGCATGAAATGATTGCTAAAGACCTATTACGTTTTAGGGATTTTCATGGTGAGCGATCTCCAGTTACAAATAAGTTATTGTGA

Predicted protein sequences of Glyma09g07250

Limit To All Plant Sequences

>Glyma09g07250.1   sequence type=predicted peptide   gene model=Glyma09g07250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFSRRLSSSLSPSIPKFPPFLPNPTFLPCFHSQPSSIDNIVVDAVCQFNSMLLVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLRFRDFHGERSPVTNKLL*

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