Glyma09g07206 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g07206): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g07206): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g07206

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6072782
stop:	6078905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g07206

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19500	AT	Annotation by Michelle Graham. TAIR10: cytokinin oxidase 2 \| chr2:8444311-8447301 REVERSE LENGTH=501	SoyBase	E_val: 6.00E-66	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009823	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005788	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0019139	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytokinin dehydrogenase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR13878	Panther	GULONOLACTONE OXIDASE	JGI		ISS
PTHR13878:SF19	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF09265	PFAM	Cytokinin dehydrogenase 1, FAD and cytokinin binding	JGI		ISS
UniRef100_A2Q544	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAD linked oxidase, N-terminal n=2 Tax=Medicago truncatula RepID=A2Q544_MEDTR	SoyBase	E_val: 3.00E-105	ISS
UniRef100_UPI000233CD93	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CD93 related cluster n=1 Tax=unknown RepID=UPI000233CD93	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g07206

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g07206 not represented in the dataset	Glyma09g07206 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g07206 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g063700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g07206

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g07206

Limit To All Plant Sequences

>Glyma09g07206.1   sequence type=CDS   gene model=Glyma09g07206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTAATTTAGCATTTTCCATTGCTATTGCTGTTGTATGGCTATCTAGCATACTAGTGTTCACACAAGCACAATTTCAATTCCAACCTCAACCGATTATGACCCCATTGGCAGTTTTTGAGCCATCTTCAGTTAGTGACATCTCAAGTTTGATAAAATTCTCAAACTCTCTTGCAACCCCTTTCACCATAGCACGAGATGCGGTGGTGTTAAATATAACTAATCTCAATGATTTTCGAAATGGGTTAGGGATTTTGGTGGCTGATTGTGATCATGATGGGAAGAGGAAAGGAGACCTTGTGACTTGCTCTAAGGAGAAGAACTCGGATACATTTTATGCTGTCCTTGGAGGATTAGGTCAGTTTGGGGTGATAACAAGAGCAAGAATACCTCTAGGAGCTGCACCTACTAGGGCAATTTTTTATGTCGGATATTTGCAGGTTAAATGGCTTCACCTGCTATACAACAACTTCACTGCATTTTCTGGAGACCAAGAACATTTAATCTCGTTCAGTGAAAGAAATGAGATTATTGCAGCAGATTATGTAGAAGGTATGCTTCTATTGAATCAGCCACCATTGGATCTTTCCTTTTATGCAGCTTCTGATCAACAGAGGATAACGACACTGGTAACTCAATATGGCATCGTCTACATCTTAGAGCTTGTCAAATACTATGACAACAACTCTCAAGCACACATCAATGAGGATCTTGTGAATTTGGTAAAAGGGTTAAATTTTGTACCTACATTTATGTTAGAAAAAGATGCATCATACGAAGAGTTCTTAAACAGAGTTCATGTTGCCGAGCTAGTTCTTAGGCCAAAAGGACTTTCGAAAATTCCTCATCCTTGGTTGAACATCTGGGTTCCAAGATCTCGAATCTCATATTTCAATGATGGTGTCTTCAAGGACATTATTCTTAAGCAAAATATTGCTGTCGGAATCTCTTTAGTCTAA

Predicted protein sequences of Glyma09g07206

Limit To All Plant Sequences

>Glyma09g07206.1   sequence type=predicted peptide   gene model=Glyma09g07206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNLAFSIAIAVVWLSSILVFTQAQFQFQPQPIMTPLAVFEPSSVSDISSLIKFSNSLATPFTIARDAVVLNITNLNDFRNGLGILVADCDHDGKRKGDLVTCSKEKNSDTFYAVLGGLGQFGVITRARIPLGAAPTRAIFYVGYLQVKWLHLLYNNFTAFSGDQEHLISFSERNEIIAADYVEGMLLLNQPPLDLSFYAASDQQRITTLVTQYGIVYILELVKYYDNNSQAHINEDLVNLVKGLNFVPTFMLEKDASYEEFLNRVHVAELVLRPKGLSKIPHPWLNIWVPRSRISYFNDGVFKDIILKQNIAVGISLV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain