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Report for Sequence Feature Glyma09g06620
Feature Type: gene_model
Chromosome: Gm09
Start: 5345277
stop: 5350939
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g06620
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25850 AT
Annotation by Michelle Graham. TAIR10: OSBP(oxysterol binding protein)-related protein 4B | chr4:13143859-13146654 FORWARD LENGTH=383
SoyBase E_val: 4.00E-152 ISS
GO:0008202 GO-bp
Annotation by Michelle Graham. GO Biological Process: steroid metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008142 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxysterol binding
SoyBase N/A ISS
KOG2210
KOG
Oxysterol-binding protein
JGI ISS
PTHR10972 Panther
OXYSTEROL-BINDING PROTEIN
JGI ISS
PTHR10972:SF27 Panther
OXYSTEROL BINDING PROTEIN
JGI ISS
PF01237 PFAM
Oxysterol-binding protein
JGI ISS
UniRef100_Q2HUM2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oxysterol-binding protein n=2 Tax=Medicago truncatula RepID=Q2HUM2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233CD82 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CD82 related cluster n=1 Tax=unknown RepID=UPI000233CD82
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g06620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g06620
Paralog Evidence Comments
Glyma15g17800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g06620 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g058800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g06620
Transcripts of Glyma09g06620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g06620.2 sequence type=transcript gene model=Glyma09g06620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTATCCCTTCTCCCTTGTATAAATACAAACAAAGAAGAAGGGGTAGCATAGTTGACAAATGAAGATTATAAGCCAGCAATAGCATCAACTGTGATCTGCTGTCCAAAATCCTGCGTTATATATGCAGCAAACGGCAAAGTTTCTTTAATTCTTCATATATATTTATTTTCACAATCCGATCAAAGCAAGACCAACATATATATTCATTCATCTTCACGTACATATCCCTCGTTAGTTTTCAGATAATATGGTGCAGGAGCAGGAGAGTGAGACAAACATTGTGCTGACGAAGCCATTCTCTTTAGGAAATGGGAATGAATCAGATTCTGAGGTTTATAGTGCGCCAAATATTTTGCAGCGCATATTAAGTCTGCTTACGAATGTGCGGCCAGGATCTGATCTCACTCGCTTTCAGCTGCCTCCTCAATTCAACTTCCCTAAGTCACAACTTCAGTGCTATGGAGAATCTATATATTCCTCAACTTCAGATTTGCTAAGCAGGTGTAACACTGGGCAGAGTCCACTTGAAAGGCTCATATTTGTTGTAGCATGGAGCATATCCACCACACGACCAGCAATTTTTGGAGTTGCTCCCTACAACCCCACTCTTGGAGAGACCCATCATGTTTCCAAAGGAAACCTTAATGTCTTATTAGAGCAGGCTTCACACCACCCTCCTGTATCTGCCCTCCATGCAACTGATGAGAAAGAAAATATAGAAATTATATGGTGCCAGTATCCTGTTCCAAAGTTCAATGGTACTTCAGTGGAAGCTCAGGTGCATGGGAAACGGCAGCTGAAGCTCATCAATCATGGAGAGACATATGAAATGAATTCTCCTCACCTCTTGATCAAAATTCTTCCAGTGCCTGGAATTGATTGGGTTGGCAATGTAAATATCAAGTGCATAGAAACAGGCCTTGTGGCTGAATTATGCTACACTAGTCAATCTTTCTTTGGATTTGGAGGGAGTAAAAGATTGATAAAAGGGAAGATCATTGATTCATCTTCATTGAAGATTCTGCATGAAGTTAATGGTCACTGGGATAGTACCGTAACACTAAAGGAAACAAGAAGTGGAGAAATAAGAGTGATATATGATGCCAAAGAAGTCATTTCAGGGCTTCAAGCTCCTACTTTGAAGGATGCAGAGAGTGTGTGGCTAACTGAATCAGCTCTTATTTGGAGTGAGTTGAGCCAAGCCATTCTAAGCAAAGACTGGGAAAAAGCAAGAGAAGCAAAGAAAGCTGTGGAGGAAAGACAGAGGGAGCTCTTGAGAGAGAGAGAATCAAAAGGAGAAACTTGGGTTCCTAAGCATTTTATTCTGTCTCAAAGCAAAGAAGGGATCTGGGACTGTTCTCCTATTCAAAAGTGGGTCCCGGCATCTCCTATTGTCACCTTGTAATTTGCTATATAGTTTATATTTGCCACTAGTTCCACTACTACATTATTAGTACTATTTTATAAAATTAGGCATGTGAAAGTTGTTGTCAAAGACATCATTTGCTTGGTCAACCTTCCTAAAAACAAGAACAACGAAAATCTATCTGGTATTAGGCCCCTTATTGGGTTGGTGCTTAGAAGGAAGAAATTATCTGTAGAATACAAGTTTGGCTACCAGACTCAACGAAATATTGAATTTAATCCCCTTCCTTTCCCTTCATTTGGACTACAAAATTATCATCAGTTGTTAAAATACTATAAAAAGTTTGTGCTGCATATCCTAATCTACAATCTACTAGCAAAA
Coding sequences of Glyma09g06620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g06620.1 sequence type=CDS gene model=Glyma09g06620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCAGGAGAGTGAGACAAACATTGTGCTGACGAAGCCATTCTCTTTAGGAAATGGGAATGAATCAGATTCTGAGGTTTATAGTGCGCCAAATATTTTGCAGCGCATATTAAGTCTGCTTACGAATGTGCGGCCAGGATCTGATCTCACTCGCTTTCAGCTGCCTCCTCAATTCAACTTCCCTAAGTCACAACTTCAGTGCTATGGAGAATCTATATATTCCTCAACTTCAGATTTGCTAAGCAGGTGTAACACTGGGCAGAGTCCACTTGAAAGGCTCATATTTGTTGTAGCATGGAGCATATCCACCACACGACCAGCAATTTTTGGAGTTGCTCCCTACAACCCCACTCTTGGAGAGACCCATCATGTTTCCAAAGGAAACCTTAATGTCTTATTAGAGCAGGCTTCACACCACCCTCCTGTATCTGCCCTCCATGCAACTGATGAGAAAGAAAATATAGAAATTATATGGTGCCAGTATCCTGTTCCAAAGTTCAATGGTACTTCAGTGGAAGCTCAGGTGCATGGGAAACGGCAGCTGAAGCTCATCAATCATGGAGAGACATATGAAATGAATTCTCCTCACCTCTTGATCAAAATTCTTCCAGTGCCTGGAATTGATTGGGTTGGCAATGTAAATATCAAGTGCATAGAAACAGGCCTTGTGGCTGAATTATGCTACACTAGTCAATCTTTCTTTGGATTTGGAGGGAGTAAAAGATTGATAAAAGGGAAGATCATTGATTCATCTTCATTGAAGATTCTGCATGAAGTTAATGGTCACTGGGATAGTACCGTAACACTAAAGGAAACAAGAAGTGGAGAAATAAGAGTGATATATGATGCCAAAGAAGTCATTTCAGGGCTTCAAGCTCCTACTTTGAAGGATGCAGAGAGTGTGTGGCTAACTGAATCAGCTCTTATTTGGAGTGAGTTGAGCCAAGCCATTCTAAGCAAAGACTGGGAAAAAGCAAGAGAAGCAAAGAAAGCTGTGGAGGAAAGACAGAGGGAGCTCTTGAGAGAGAGAGAATCAAAAGGAGAAACTTGGGTTCCTAAGCATTTTATTCTGTCTCAAAGCAAAGAAGGGATCTGGGACTGTTCTCCTATTCAAAAGTGGGTCCCGGCATCTCCTATTGTCACCTTGTAA
>Glyma09g06620.2 sequence type=CDS gene model=Glyma09g06620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGCAGGAGCAGGAGAGTGAGACAAACATTGTGCTGACGAAGCCATTCTCTTTAGGAAATGGGAATGAATCAGATTCTGAGGTTTATAGTGCGCCAAATATTTTGCAGCGCATATTAAGTCTGCTTACGAATGTGCGGCCAGGATCTGATCTCACTCGCTTTCAGCTGCCTCCTCAATTCAACTTCCCTAAGTCACAACTTCAGTGCTATGGAGAATCTATATATTCCTCAACTTCAGATTTGCTAAGCAGGTGTAACACTGGGCAGAGTCCACTTGAAAGGCTCATATTTGTTGTAGCATGGAGCATATCCACCACACGACCAGCAATTTTTGGAGTTGCTCCCTACAACCCCACTCTTGGAGAGACCCATCATGTTTCCAAAGGAAACCTTAATGTCTTATTAGAGCAGGCTTCACACCACCCTCCTGTATCTGCCCTCCATGCAACTGATGAGAAAGAAAATATAGAAATTATATGGTGCCAGTATCCTGTTCCAAAGTTCAATGGTACTTCAGTGGAAGCTCAGGTGCATGGGAAACGGCAGCTGAAGCTCATCAATCATGGAGAGACATATGAAATGAATTCTCCTCACCTCTTGATCAAAATTCTTCCAGTGCCTGGAATTGATTGGGTTGGCAATGTAAATATCAAGTGCATAGAAACAGGCCTTGTGGCTGAATTATGCTACACTAGTCAATCTTTCTTTGGATTTGGAGGGAGTAAAAGATTGATAAAAGGGAAGATCATTGATTCATCTTCATTGAAGATTCTGCATGAAGTTAATGGTCACTGGGATAGTACCGTAACACTAAAGGAAACAAGAAGTGGAGAAATAAGAGTGATATATGATGCCAAAGAAGTCATTTCAGGGCTTCAAGCTCCTACTTTGAAGGATGCAGAGAGTGTGTGGCTAACTGAATCAGCTCTTATTTGGAGTGAGTTGAGCCAAGCCATTCTAAGCAAAGACTGGGAAAAAGCAAGAGAAGCAAAGAAAGCTGTGGAGGAAAGACAGAGGGAGCTCTTGAGAGAGAGAGAATCAAAAGGAGAAACTTGGGTTCCTAAGCATTTTATTCTGTCTCAAAGCAAAGAAGGGATCTGGGACTGTTCTCCTATTCAAAAGTGGGTCCCGGCATCTCCTATTGTCACCTTGTAA
Predicted protein sequences of Glyma09g06620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g06620.1 sequence type=predicted peptide gene model=Glyma09g06620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEQESETNIVLTKPFSLGNGNESDSEVYSAPNILQRILSLLTNVRPGSDLTRFQLPPQFNFPKSQLQCYGESIYSSTSDLLSRCNTGQSPLERLIFVVAWSISTTRPAIFGVAPYNPTLGETHHVSKGNLNVLLEQASHHPPVSALHATDEKENIEIIWCQYPVPKFNGTSVEAQVHGKRQLKLINHGETYEMNSPHLLIKILPVPGIDWVGNVNIKCIETGLVAELCYTSQSFFGFGGSKRLIKGKIIDSSSLKILHEVNGHWDSTVTLKETRSGEIRVIYDAKEVISGLQAPTLKDAESVWLTESALIWSELSQAILSKDWEKAREAKKAVEERQRELLRERESKGETWVPKHFILSQSKEGIWDCSPIQKWVPASPIVTL*
>Glyma09g06620.2 sequence type=predicted peptide gene model=Glyma09g06620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVQEQESETNIVLTKPFSLGNGNESDSEVYSAPNILQRILSLLTNVRPGSDLTRFQLPPQFNFPKSQLQCYGESIYSSTSDLLSRCNTGQSPLERLIFVVAWSISTTRPAIFGVAPYNPTLGETHHVSKGNLNVLLEQASHHPPVSALHATDEKENIEIIWCQYPVPKFNGTSVEAQVHGKRQLKLINHGETYEMNSPHLLIKILPVPGIDWVGNVNIKCIETGLVAELCYTSQSFFGFGGSKRLIKGKIIDSSSLKILHEVNGHWDSTVTLKETRSGEIRVIYDAKEVISGLQAPTLKDAESVWLTESALIWSELSQAILSKDWEKAREAKKAVEERQRELLRERESKGETWVPKHFILSQSKEGIWDCSPIQKWVPASPIVTL*