SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17690 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). | chr1:6082878-6088157 REVERSE LENGTH=7 | SoyBase | E_val: 0 | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA transcription | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2340 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12933 | Panther | ORF PROTEIN-RELATED | JGI | ISS | |
| PF06862 | PFAM | Protein of unknown function (DUF1253) | JGI | ISS | |
| UniRef100_G7IN25 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Digestive organ expansion factor-like protein n=1 Tax=Medicago truncatula RepID=G7IN25_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L1B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L1B7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g06450 not represented in the dataset |
Glyma09g06450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g17661 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g057700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g06450.1 sequence type=CDS gene model=Glyma09g06450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGACGCCGCAATCTGCCTCTAAATTGAAAAGGAAAAGGGAAGAAGGTAAAGGTAAGAAAAAAAAGAAAGCAGGTAACAAGGAGGAAAAAAGGAAAATTGCAGACATCCCTGAATCTCGTAGCATGCTGGAGTATGACCATGATGAAGGGGAAGGGTTTGACCATGAGTCTCCTAGAAGCAAAGTTGTGGAAAGTTTGTGGCAAGATCCTGATGTCAATGATTCTGGATTAACAGAAGGTTCTGAAACTAAAGAAGATGTTGGGTTTCATTCAGATGAAGAGGATATTGGAATTACTGGCCAACCAACTTCTGATGATTCATTGCATTTGAGCTCTTTTGATTTACATTTGCAACATAATTTATCCAAAGAAGAAATTGACGGCCAAAGGAATAGGAAATTTAGCTGGGAGACTCCAGCCATTGGCATGTCAAATTGCAAGTGGATAGGAACTGGAGAGAACATTTTGGAGGATTTGGATATCAATTCTTGTCATGGTCTCAAATCAAAATTGTCCGAGCATTGGATGGATGTCTACAGGACAGCTGGAGGCAAAGATATTAGTTCACCTAAACAGAAGATATTTTTCTCCCTTTGCAGCAGTTACCGGGATATACTTTACTGTAACAAGAGGCCTTTCTATCTCAAAGGTCTTGAAGACACAAGCATCATGGATGCATACATAATGCATTCTCTCAATCATGTCTTCAGAACTAGAGACTGCGTGAAAAAAAATGATTCCAAACTGACCAAGCTTAAAGAGAATGCTGATAGTGATAAATTTCGAGATCAGGGTTTTACTCGTCCTAAGGTTTTAATTTTATTGCCATTGGCAAGTATTGTGTACCGTGTTGTGAAGAGGCTTATACAGCTTACACCTTCAGCTTTCAAGGTCAATGTTGAACATATGGATCGTTTCTCCACTAAATTTGGAAGTGAAGAACATAAAGGTAATACAGAAAATGACGATGAATCTGAAAATGCAAAACCTCAAAAGTCTTCCAAAGCGACAGATTTTCAAATACTTTTTGGTGGTAATAATGAGGATGACTTTATGATTGGCATCAAATTTACTAGGAAGACAATCAAGTTGTTTAGTGATTTCCATACCTCTGACATTATTATTGCTTCAGCACTTTGCTTGGTTAATAAAATTGAAGAGGCTGGGAGTAATAAGGAAAAAGATGTAGATTTTCTTTCTTCCATAGAGGTTCTGATCATTGATCATGCAGATGTAATATCAATGCAGAATTGGTCTCATGTGCATACAGTTATTGAACACTTAAACCGCTTACCATCTAAGCAGCTTGGAACAGATGTAATGCGCATTAGACCATGGTATCTTGATGATCATGCCAGATTTTACAGGCAAACAATAATACTGGGTCTTTATTCAAATCCAGATGTAAATGCTTCATTCAATCATCAGTGCCTTAATTATGAAGGGAAGGTGAAATTGATCAGTGAATATAAAGGTGTCTTACACAAAGTGGTACCCGAAATACGACAAATTTATGAACGATTTAACGTAGACTCTATAGTAGAAGCTGATGATGCTCGATTTGATTATTTTGTTAAAAAGGTTTTTCCCAGAATAAAAGATTTAGATCAGGGAGGGACCATGTTGTTTACCAATTCTTACTTTGAATTTATTCGAATCCGAAATTTTTTGAAGTCACAAAATGCCTCCTTTTGTCTGCTTGGGGAGTATACAACCCAAAGTGATATTTCTCGTGCGCGTCTTTGGTTCTATGAAGGAAAAAGAAAAATTATGGTTTACACAGAGAGATCTCACTTTTACCACAGATATAAGATCCGTGGGGTTCAGAATTTAATCATTTATTCACTCCCAGAGAGGAAAGAATTTTACCCTGAGATTGTGAATATGCTTGATGGGTCGGACAATATGACATGCACTGTCCTTTTTTCCTACCTTGACAAGCTTCGGCTGGAAAGAATTGTTGGAACTACTCCAGCCAAAAGGATGGTGGCTGCGGAGAAAGGTGTTTTTGTTTTCTGCCATTAG
>Glyma09g06450.1 sequence type=predicted peptide gene model=Glyma09g06450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTPQSASKLKRKREEGKGKKKKKAGNKEEKRKIADIPESRSMLEYDHDEGEGFDHESPRSKVVESLWQDPDVNDSGLTEGSETKEDVGFHSDEEDIGITGQPTSDDSLHLSSFDLHLQHNLSKEEIDGQRNRKFSWETPAIGMSNCKWIGTGENILEDLDINSCHGLKSKLSEHWMDVYRTAGGKDISSPKQKIFFSLCSSYRDILYCNKRPFYLKGLEDTSIMDAYIMHSLNHVFRTRDCVKKNDSKLTKLKENADSDKFRDQGFTRPKVLILLPLASIVYRVVKRLIQLTPSAFKVNVEHMDRFSTKFGSEEHKGNTENDDESENAKPQKSSKATDFQILFGGNNEDDFMIGIKFTRKTIKLFSDFHTSDIIIASALCLVNKIEEAGSNKEKDVDFLSSIEVLIIDHADVISMQNWSHVHTVIEHLNRLPSKQLGTDVMRIRPWYLDDHARFYRQTIILGLYSNPDVNASFNHQCLNYEGKVKLISEYKGVLHKVVPEIRQIYERFNVDSIVEADDARFDYFVKKVFPRIKDLDQGGTMLFTNSYFEFIRIRNFLKSQNASFCLLGEYTTQSDISRARLWFYEGKRKIMVYTERSHFYHRYKIRGVQNLIIYSLPERKEFYPEIVNMLDGSDNMTCTVLFSYLDKLRLERIVGTTPAKRMVAAEKGVFVFCH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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