Glyma09g06000 - SoyBase

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Report for Sequence Feature Glyma09g06000

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4756280
stop:	4760877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g06000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22370	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr2:9501019-9502078 REVERSE LENGTH=219	SoyBase	E_val: 3.00E-131	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3264	KOG	Uncharacterized conserved protein	JGI		ISS
UniRef100_C6TC22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TC22_SOYBN	SoyBase	E_val: 2.00E-156	ISS
UniRef100_Q9SJZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 18 n=1 Tax=Arabidopsis thaliana RepID=MED18_ARATH	SoyBase	E_val: 2.00E-128	ISS

Expression Patterns of Glyma09g06000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g06000

Paralog	Evidence	Comments
Glyma15g17250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g06000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g054300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g06000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g06000

Limit To All Plant Sequences

>Glyma09g06000.2   sequence type=transcript   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATACACCCCTATACTCCTTTTTTTGTTGATTACCCGTTATGCGCCTTTTTCTTATTTAAAAAGTACACCCCCTTGTACCCCTTTTTTTCTTCTTTAAACCCCTCTATTGTCTACACCACTTAGTTAGACCCCCCATTTTCCTCTTCTTCCTGCCTCGTCTAGGGTTGTTATCTCCTCTCTTGTTTGGCAGCTATTCTTTCCGGTGGTTCCATAGTTCCGTTGACGCCTTTCCTTAGTTCCTCTCATTCGAAGTTGTAGGGACAGCTGTGCAAGGTGGATATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAGTGGGACTGTACTGTTATCTTTATAAATGCACACTTGACAATAACATGTGAAAATTTAACGTAGGAACATGTGAAGTTCCATGACCCCACTTGCTTACTTCATATAAAGAGAAGTGAATATTAATTTTCACTTGACAAGAACATGTGAAAATTTAACGTAGGAACTTGTCTTCGGCCTTCCCATAAATCAATTGAAATTTGCACCTACCCTTTTGTTTTGTTTTATTTTTTGTCTGTACTGAAAATGTATAAGTTATCTTTTAGGAAAATAGCCCACGATATGAATGAAAATCAAGTGAACGTATGCAATTATGCA

>Glyma09g06000.3   sequence type=transcript   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATACACCCCTATACTCCTTTTTTTGTTGATTACCCGTTATGCGCCTTTTTCTTATTTAAAAAGTACACCCCCTTGTACCCCTTTTTTTCTTCTTTAAACCCCTCTATTGTCTACACCACTTAGTTAGACCCCCCATTTTCCTCTTCTTCCTGCCTCGTCTAGGGTTGTTATCTCCTCTCTTGTTTGGCAGCTATTCTTTCCGGTGGTTCCATAGTTCCGTTGACGCCTTTCCTTAGTTCCTCTCATTCGAAGTTGTAGGGACAGCTGTGCAAGGTGGATATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAGTGGGACTGTACTGTTATCTTTATAAATGCACACTTGACAATAACATGTGAAAATTTAACGTAGGAACATGTGAAGTTCCATGACCCCACTTGCTTACTTCATATAAAGAGAAGTGAATATTAATTTTCACTTGACAAGAACATGTGAAAATTTAACGTAGGAACTTGTCTTCGGCCTTCCCATAAATCAATTGAAATTTGCACCTACCCTTTTGTTTTGTTTTATTTTTTGTCTGTACTGAAAATGTATAAGTTATCTTTTAGGAAAATAGCCCACGATATGAATGAAAATCAAGTGAACGTATGCAATTATGCA

Coding sequences of Glyma09g06000

Limit To All Plant Sequences

>Glyma09g06000.1   sequence type=CDS   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

>Glyma09g06000.2   sequence type=CDS   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

>Glyma09g06000.3   sequence type=CDS   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

Predicted protein sequences of Glyma09g06000

Limit To All Plant Sequences

>Glyma09g06000.1   sequence type=predicted peptide   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

>Glyma09g06000.2   sequence type=predicted peptide   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

>Glyma09g06000.3   sequence type=predicted peptide   gene model=Glyma09g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

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