Glyma09g05960 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g05960

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4737218
stop:	4745507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54070	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:20021330-20023603 REVERSE LENGTH=574	SoyBase	E_val: 5.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_I1L183	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L183_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M396	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9M396_ARATH	SoyBase	E_val: 2.00E-91	ISS

Expression Patterns of Glyma09g05960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05960

Paralog	Evidence	Comments
Glyma15g17221	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g054100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g05960

Limit To All Plant Sequences

>Glyma09g05960.3   sequence type=transcript   gene model=Glyma09g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCTTTTTTGTCTATTAAAACCTCCCAAAATTTATTCAAACCATAATACAAACTCATGTTCTTCCCAAATCAAACCCAAGAACAAACAACAAACCTCAAAACGCTACAAATTAAACACAAATCCATCTAAATCAAACTCATTCATAACAAATCCAAGTCTAATTAAAGTCATTTCCAAGCCCCATCCCATAAGGAAAATAGATCAAGAAACCCAAAAATCTCAGATCTCGTTAGTGACATCAGTCCAGATTTCACGAACACTATCCAATATTAGGGAGGTCGAGTCGTTGGAGATGTCCGCACATAACCACCGCACCACCATAGCCTGTGACTCGCACCCCCACACAACCCATCACCGTCATCACCGCCGCACTCATGGTCTTCGAGATCTGAAAGAGAAGTTGAGAATGGAAAAGGCGAGGGATGGGTTGTTTGAGGGTCTCAGAGATGTGACGAAGTCAATTAAGTGGAGGAGGAAAAGTTGCCGTCAAAAGTTCTACTTGCAGGTTCCACAGTTGTGAATTTGATGAATAATATCATCACTGAAGGGCATTCTATTTCGAGGCCACCATATTTCGATGGAAGAAATTACATCGAGTGGAAGGAGCGTATGAAAATATTCATACAATCCGTTGACTTCAAGCTATGGCTTCTGATAAAAAATGGACCAAAAGTTCCAACAAAGCTAGTAGACAATGAAGAAGTGGAGAAAAGTGAAGATGAATATGATGAAGAAGACATGAAGAATTTGGAATTAGAGGCCAAAGCAAAAAATATTTTACATTGTGCCTTGAATCCAGATGATTTTGAAATATTTTCAGAGGGTCCAAAAACATCCAAGCAAATGTGGGACGAGCTTGACAGGGTTTTCCACAGGGAAAGGACTGGTGACAACTCATCAACTCCACAAGGACAACTCTCCAGCGATCCAACGGCACCAGATACAAGTCAATTTAGCTCTCCTGATCTTTACTTTTTACAGGAAACAAGGGAATCCATGAACAAATTTCTGGAGCTTTGTGTGCCCCTTCACAAGCTTGCTCTAGAAGGCAATTGGCAAGCAGCCAAAGTCATCTTAGGAAAAGATAGTAGACTGAAGCACGCAGCAATAGCAGATGGTTGGGCTACACTTCTGCATGTTGCTGTAGGTGCTAACCATGCTTCCTTTGTGAAGGAGCTGCTGCAAGAATTCGACAACGATCAATACATCTCGTTGCAAGATTACCGGGGCAACACTGCCTTCTGCTTCGCTGTTGCATCTGGAAACATGGAAATTGTTGAATTATTGAAGGGAAGAGATCCACACTTGCCAACAAGAAGGGGTGGAAGTGATTATATCCCTATTCAGTTTGCTGCGATGCAAGGAAATTGCGACATGACACGCTATCTATACGACATCAGCAAAGAAGCGTTCGAGGATACGGACAAGATAATGTTGTTCTTTACTTTTATCAAGACCGGCAACTATCACATGGCCTTAAAAATGGCAGATGAGTGGGTAGAGCTAGCTTATGCACGAGATGATAATAACGAGACAGCTTTGCATCTCTTGGCTGTAAATCAAAACCCTTTGGATTCGTGTTGTCATTGTCCAGAGATGGAAGGTTCCTTCCGGATCAACCCTGACACGAAACATGTGATGTTTCAATTGGTTAATTTTCTCTGGAAAAAAATTCTCCAGCACAAAGACCATTCGGAGGCAATGAGAATCATAAGTGAGCCTTCTCAACTATTATACGATGCTGCAGAAGTTGGTAATTTTGGATTCTTGTCAGAGCTTATTAGTGCTTACCCTGGCAAGATCATATGGGAAGTGGACAACAATGGGCAAAGTATAATTCACACAGCAGTTTCATATCGCCATGCTAGCATCTTCAATCTCGTACATGAAATAGGGTTCATTAAGGATATTCTAATATCATATATTGTCAAAGAAAACAACACTTTATTGCATTTGGCTGCAAAGTTAGCCCCACCAGATCGACTTGCAATAGTTTCTGGAGCTGCATTCCAAATGTGCCTCGAGATCATATGGTTTGAGGAGGTGAAGAAGATAATGCCACCATCGTTCATAAATTTGAAAAACTCTGATGGTCTAACTGCTCAACAATTATTCATAAAGGAGCATGAAGGATTGCGGGGAAAAGGAGAGGAATGGATGAAACGCACTGCTGAGTTTTGTATGCTTATATCAACCGTTATTGCCACAGCGATTTTTGCTGCGGCAATTAACATACCAGGTGGTATTGATGATGACACAAAAAAACCAAATTATTTGAACAAAGCATCATTCCAAGTATTTGCAATAGCAGATGCAGCTGCATTCATCTTCTCAGCAACTGCAATTTTGATATTCTTGTCTATTCTCATCTCGCGATATGCGGTGTACGACTTTCACAAGTCACTGCCCTTGAAGTTAATATTTGGACTGATAACTCTGTTCATCTCCATAGCATGCATGATGGTTGCATTTGGAAGTTCCTTCTTCATAACCTACTACTATGGTTTGAAGGTGCTTCCTGATTCAGTTGCAGTACTTTCGTGTCTACCATTGCTTCTATATGTAGGTTTGCAATTTTCATTATGGTCAGATATCATCTACTCAACATTCTATTGTAGGAATCTATTCAAGCCAAGTAAACGTATGATTTACCTATCCACTACAGAACTAGAGGAGGCATATAATCAGACCATATTTTGATTTGTTGAAGTTGTAATATATTATCCTCGTTACAAGGTCCAATGCAAGTTAAAAGTGTAACTTGGACTGTTTAATTTTATAAGGTTTAATCTAAAATATTTTTTAAGGAAAATTAGTTTTTCACAGAATTATCCTTAATTAAAATTAGTCTTAGAATGATGTGTAAGTGAAAAAATGTATGACCGTGGCCATACTGGTATGACCATGTCTAAGCGCTGATGTGTTACAAATTTTTGAGATGGCCAGGGTCCATTCTCCACGGCCATGCGAGACTATTCTACGAAGTTGTTCACCACAGTCATGGTTCATGAGTGTTGTCAGTCACTTAAAATTTCCCTTATAAATAGTGATTTTTAAAACAGAAATCCCTATATTTTCCTCTGAGCGCGATTTTGGGAGTTTTCAAGGGAGAATAACACTCTGAGAGCATCCTTGACTACAGAGGAGCTTGAAGATCACAATTAGGATCCTTTGTTGTAAAGTCCCTTCCTCTTTGCAATTTAAATTTCTTCTCTTATGATTTATAACTTTATCATTAACACGAGTTGCTAGACCCTTTAGTACGATTATGA

Coding sequences of Glyma09g05960

Limit To All Plant Sequences

>Glyma09g05960.2   sequence type=CDS   gene model=Glyma09g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATATCATCACTGAAGGGCATTCTATTTCGAGGCCACCATATTTCGATGGAAGAAATTACATCGAGTGGAAGGAGCGTATGAAAATATTCATACAATCCGTTGACTTCAAGCTATGGCTTCTGATAAAAAATGGACCAAAAGTTCCAACAAAGCTAGTAGACAATGAAGAAGTGGAGAAAAGTGAAGATGAATATGATGAAGAAGACATGAAGAATTTGGAATTAGAGGCCAAAGCAAAAAATATTTTACATTGTGCCTTGAATCCAGATGATTTTGAAATATTTTCAGAGGGTCCAAAAACATCCAAGCAAATGTGGGACGAGCTTGACAGGGTTTTCCACAGGGAAAGGACTGGTGACAACTCATCAACTCCACAAGGACAACTCTCCAGCGATCCAACGGCACCAGATACAAGTCAATTTAGCTCTCCTGATCTTTACTTTTTACAGGAAACAAGGGAATCCATGAACAAATTTCTGGAGCTTTGTGTGCCCCTTCACAAGCTTGCTCTAGAAGGCAATTGGCAAGCAGCCAAAGTCATCTTAGGAAAAGATAGTAGACTGAAGCACGCAGCAATAGCAGATGGTTGGGCTACACTTCTGCATGTTGCTGTAGGTGCTAACCATGCTTCCTTTGTGAAGGAGCTGCTGCAAGAATTCGACAACGATCAATACATCTCGTTGCAAGATTACCGGGGCAACACTGCCTTCTGCTTCGCTGTTGCATCTGGAAACATGGAAATTGTTGAATTATTGAAGGGAAGAGATCCACACTTGCCAACAAGAAGGGGTGGAAGTGATTATATCCCTATTCAGTTTGCTGCGATGCAAGGAAATTGCGACATGACACGCTATCTATACGACATCAGCAAAGAAGCGTTCGAGGATACGGACAAGATAATGTTGTTCTTTACTTTTATCAAGACCGGCAACTATCACATGGCCTTAAAAATGGCAGATGAGTGGGTAGAGCTAGCTTATGCACGAGATGATAATAACGAGACAGCTTTGCATCTCTTGGCTGTAAATCAAAACCCTTTGGATTCGTGTTGTCATTGTCCAGAGATGGAAGGTTCCTTCCGGATCAACCCTGACACGAAACATGTGATGTTTCAATTGGTTAATTTTCTCTGGAAAAAAATTCTCCAGCACAAAGACCATTCGGAGGCAATGAGAATCATAAGTGAGCCTTCTCAACTATTATACGATGCTGCAGAAGTTGGTAATTTTGGATTCTTGTCAGAGCTTATTAGTGCTTACCCTGGCAAGATCATATGGGAAGTGGACAACAATGGGCAAAGTATAATTCACACAGCAGTTTCATATCGCCATGCTAGCATCTTCAATCTCGTACATGAAATAGGGTTCATTAAGGATATTCTAATATCATATATTGTCAAAGAAAACAACACTTTATTGCATTTGGCTGCAAAGTTAGCCCCACCAGATCGACTTGCAATAGTTTCTGGAGCTGCATTCCAAATGTGCCTCGAGATCATATGGTTTGAGGAGGTGAAGAAGATAATGCCACCATCGTTCATAAATTTGAAAAACTCTGATGGTCTAACTGCTCAACAATTATTCATAAAGGAGCATGAAGGATTGCGGGGAAAAGGAGAGGAATGGATGAAACGCACTGCTGAGTTTTGTATGCTTATATCAACCGTTATTGCCACAGCGATTTTTGCTGCGGCAATTAACATACCAGGTGGTATTGATGATGACACAAAAAAACCAAATTATTTGAACAAAGCATCATTCCAAGTATTTGCAATAGCAGATGCAGCTGCATTCATCTTCTCAGCAACTGCAATTTTGATATTCTTGTCTATTCTCATCTCGCGATATGCGGTGTACGACTTTCACAAGTCACTGCCCTTGAAGTTAATATTTGGACTGATAACTCTGTTCATCTCCATAGCATGCATGATGGTTGCATTTGGAAGTTCCTTCTTCATAACCTACTACTATGGTTTGAAGGTGCTTCCTGATTCAGTTGCAGTACTTTCGTGTCTACCATTGCTTCTATATGTAGGTTTGCAATTTTCATTATGGTCAGATATCATCTACTCAACATTCTATTGTAGGAATCTATTCAAGCCAAGTAAACGTATGATTTACCTATCCACTACAGAACTAGAGGAGGCATATAATCAGACCATATTTTGA

>Glyma09g05960.3   sequence type=CDS   gene model=Glyma09g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATATCATCACTGAAGGGCATTCTATTTCGAGGCCACCATATTTCGATGGAAGAAATTACATCGAGTGGAAGGAGCGTATGAAAATATTCATACAATCCGTTGACTTCAAGCTATGGCTTCTGATAAAAAATGGACCAAAAGTTCCAACAAAGCTAGTAGACAATGAAGAAGTGGAGAAAAGTGAAGATGAATATGATGAAGAAGACATGAAGAATTTGGAATTAGAGGCCAAAGCAAAAAATATTTTACATTGTGCCTTGAATCCAGATGATTTTGAAATATTTTCAGAGGGTCCAAAAACATCCAAGCAAATGTGGGACGAGCTTGACAGGGTTTTCCACAGGGAAAGGACTGGTGACAACTCATCAACTCCACAAGGACAACTCTCCAGCGATCCAACGGCACCAGATACAAGTCAATTTAGCTCTCCTGATCTTTACTTTTTACAGGAAACAAGGGAATCCATGAACAAATTTCTGGAGCTTTGTGTGCCCCTTCACAAGCTTGCTCTAGAAGGCAATTGGCAAGCAGCCAAAGTCATCTTAGGAAAAGATAGTAGACTGAAGCACGCAGCAATAGCAGATGGTTGGGCTACACTTCTGCATGTTGCTGTAGGTGCTAACCATGCTTCCTTTGTGAAGGAGCTGCTGCAAGAATTCGACAACGATCAATACATCTCGTTGCAAGATTACCGGGGCAACACTGCCTTCTGCTTCGCTGTTGCATCTGGAAACATGGAAATTGTTGAATTATTGAAGGGAAGAGATCCACACTTGCCAACAAGAAGGGGTGGAAGTGATTATATCCCTATTCAGTTTGCTGCGATGCAAGGAAATTGCGACATGACACGCTATCTATACGACATCAGCAAAGAAGCGTTCGAGGATACGGACAAGATAATGTTGTTCTTTACTTTTATCAAGACCGGCAACTATCACATGGCCTTAAAAATGGCAGATGAGTGGGTAGAGCTAGCTTATGCACGAGATGATAATAACGAGACAGCTTTGCATCTCTTGGCTGTAAATCAAAACCCTTTGGATTCGTGTTGTCATTGTCCAGAGATGGAAGGTTCCTTCCGGATCAACCCTGACACGAAACATGTGATGTTTCAATTGGTTAATTTTCTCTGGAAAAAAATTCTCCAGCACAAAGACCATTCGGAGGCAATGAGAATCATAAGTGAGCCTTCTCAACTATTATACGATGCTGCAGAAGTTGGTAATTTTGGATTCTTGTCAGAGCTTATTAGTGCTTACCCTGGCAAGATCATATGGGAAGTGGACAACAATGGGCAAAGTATAATTCACACAGCAGTTTCATATCGCCATGCTAGCATCTTCAATCTCGTACATGAAATAGGGTTCATTAAGGATATTCTAATATCATATATTGTCAAAGAAAACAACACTTTATTGCATTTGGCTGCAAAGTTAGCCCCACCAGATCGACTTGCAATAGTTTCTGGAGCTGCATTCCAAATGTGCCTCGAGATCATATGGTTTGAGGAGGTGAAGAAGATAATGCCACCATCGTTCATAAATTTGAAAAACTCTGATGGTCTAACTGCTCAACAATTATTCATAAAGGAGCATGAAGGATTGCGGGGAAAAGGAGAGGAATGGATGAAACGCACTGCTGAGTTTTGTATGCTTATATCAACCGTTATTGCCACAGCGATTTTTGCTGCGGCAATTAACATACCAGGTGGTATTGATGATGACACAAAAAAACCAAATTATTTGAACAAAGCATCATTCCAAGTATTTGCAATAGCAGATGCAGCTGCATTCATCTTCTCAGCAACTGCAATTTTGATATTCTTGTCTATTCTCATCTCGCGATATGCGGTGTACGACTTTCACAAGTCACTGCCCTTGAAGTTAATATTTGGACTGATAACTCTGTTCATCTCCATAGCATGCATGATGGTTGCATTTGGAAGTTCCTTCTTCATAACCTACTACTATGGTTTGAAGGTGCTTCCTGATTCAGTTGCAGTACTTTCGTGTCTACCATTGCTTCTATATGTAGGTTTGCAATTTTCATTATGGTCAGATATCATCTACTCAACATTCTATTGTAGGAATCTATTCAAGCCAAGTAAACGTATGATTTACCTATCCACTACAGAACTAGAGGAGGCATATAATCAGACCATATTTTGA

Predicted protein sequences of Glyma09g05960

Limit To All Plant Sequences

>Glyma09g05960.2   sequence type=predicted peptide   gene model=Glyma09g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNIITEGHSISRPPYFDGRNYIEWKERMKIFIQSVDFKLWLLIKNGPKVPTKLVDNEEVEKSEDEYDEEDMKNLELEAKAKNILHCALNPDDFEIFSEGPKTSKQMWDELDRVFHRERTGDNSSTPQGQLSSDPTAPDTSQFSSPDLYFLQETRESMNKFLELCVPLHKLALEGNWQAAKVILGKDSRLKHAAIADGWATLLHVAVGANHASFVKELLQEFDNDQYISLQDYRGNTAFCFAVASGNMEIVELLKGRDPHLPTRRGGSDYIPIQFAAMQGNCDMTRYLYDISKEAFEDTDKIMLFFTFIKTGNYHMALKMADEWVELAYARDDNNETALHLLAVNQNPLDSCCHCPEMEGSFRINPDTKHVMFQLVNFLWKKILQHKDHSEAMRIISEPSQLLYDAAEVGNFGFLSELISAYPGKIIWEVDNNGQSIIHTAVSYRHASIFNLVHEIGFIKDILISYIVKENNTLLHLAAKLAPPDRLAIVSGAAFQMCLEIIWFEEVKKIMPPSFINLKNSDGLTAQQLFIKEHEGLRGKGEEWMKRTAEFCMLISTVIATAIFAAAINIPGGIDDDTKKPNYLNKASFQVFAIADAAAFIFSATAILIFLSILISRYAVYDFHKSLPLKLIFGLITLFISIACMMVAFGSSFFITYYYGLKVLPDSVAVLSCLPLLLYVGLQFSLWSDIIYSTFYCRNLFKPSKRMIYLSTTELEEAYNQTIF*

>Glyma09g05960.3   sequence type=predicted peptide   gene model=Glyma09g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNIITEGHSISRPPYFDGRNYIEWKERMKIFIQSVDFKLWLLIKNGPKVPTKLVDNEEVEKSEDEYDEEDMKNLELEAKAKNILHCALNPDDFEIFSEGPKTSKQMWDELDRVFHRERTGDNSSTPQGQLSSDPTAPDTSQFSSPDLYFLQETRESMNKFLELCVPLHKLALEGNWQAAKVILGKDSRLKHAAIADGWATLLHVAVGANHASFVKELLQEFDNDQYISLQDYRGNTAFCFAVASGNMEIVELLKGRDPHLPTRRGGSDYIPIQFAAMQGNCDMTRYLYDISKEAFEDTDKIMLFFTFIKTGNYHMALKMADEWVELAYARDDNNETALHLLAVNQNPLDSCCHCPEMEGSFRINPDTKHVMFQLVNFLWKKILQHKDHSEAMRIISEPSQLLYDAAEVGNFGFLSELISAYPGKIIWEVDNNGQSIIHTAVSYRHASIFNLVHEIGFIKDILISYIVKENNTLLHLAAKLAPPDRLAIVSGAAFQMCLEIIWFEEVKKIMPPSFINLKNSDGLTAQQLFIKEHEGLRGKGEEWMKRTAEFCMLISTVIATAIFAAAINIPGGIDDDTKKPNYLNKASFQVFAIADAAAFIFSATAILIFLSILISRYAVYDFHKSLPLKLIFGLITLFISIACMMVAFGSSFFITYYYGLKVLPDSVAVLSCLPLLLYVGLQFSLWSDIIYSTFYCRNLFKPSKRMIYLSTTELEEAYNQTIF*

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