Glyma09g05840 - SoyBase

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Report for Sequence Feature Glyma09g05840

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4602321
stop:	4602719
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23230	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr3:8289647-8290066 REVERSE LENGTH=139	SoyBase	E_val: 1.00E-37	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9GS21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GS21_POPTR	SoyBase	E_val: 4.00E-37	ISS
UniRef100_I1L176	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L176_SOYBN	SoyBase	E_val: 4.00E-92	ISS

Expression Patterns of Glyma09g05840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05840

Paralog	Evidence	Comments
Glyma15g17090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g052800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g05840

Limit To All Plant Sequences

>Glyma09g05840.1   sequence type=CDS   gene model=Glyma09g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGCACATAAGGGGGATGAAGACAAAGAGAAAAGAGGGGAAGAAGTGAAATACCGCGGCGTGAGAAGGAGGCCATGGGGTAAGTTCGGAGCAGAGATCAGAGACCCAACGAAACCTACAGGAAGACAATGGTTAGGAACATTTGACACGGCGGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGGGGTGTTCTTGCAATCCTTAATTTTCCAGATGAGTGCTATTCTCAACTCCCTTTTGTATCATCAAACCCTACTAGTACGGCTAATGGAAGTTCTTTTGCTCCAACACATAAGGAAGTTATTGAGTTTGAGTGTTTGGATAACAAGGTGTTGGAAGACCTTCTTGAGTCCGAAGTGAAAAGAAGGAACGAAGACTAA

Predicted protein sequences of Glyma09g05840

Limit To All Plant Sequences

>Glyma09g05840.1   sequence type=predicted peptide   gene model=Glyma09g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAHKGDEDKEKRGEEVKYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIELRGVLAILNFPDECYSQLPFVSSNPTSTANGSSFAPTHKEVIEFECLDNKVLEDLLESEVKRRNED*

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