Glyma09g05830 - SoyBase

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Report for Sequence Feature Glyma09g05830

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4575404
stop:	4584274
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35060	AT	Annotation by Michelle Graham. TAIR10: K+ uptake permease 11 \| chr2:14775184-14778184 REVERSE LENGTH=792	SoyBase	E_val: 0	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02705	PFAM	K+ potassium transporter	JGI		ISS
UniRef100_G5DE91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium trasporter 1 n=1 Tax=Amaranthus sp. LHY-2011 RepID=G5DE91_9CARY	SoyBase	E_val: 0	ISS
UniRef100_I1L175	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L175_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g05830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05830

Paralog	Evidence	Comments
Glyma15g17080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g052700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g05830

Limit To All Plant Sequences

>Glyma09g05830.1   sequence type=CDS   gene model=Glyma09g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAACTGGGTTTGATGAAGACGGTGATAACAGAGGCGGTATGTGGGTTTTGGAACAGAAGATTGACCAGCCAATGGATGAAGAAGCTGAAAGGCTCAAAAATACGTACAGAGAAAAAAAACTTTCTACATTGTTGCTTCTGCGGCTTGCATATCAGAGTCTTGGAGTAGTTTATGGAGATTTGGGAACTTCCCCCTTATACGTTTTCTATAATACATTTCCTCAACAAATTGACAATCAGGAGGATGTGATTGGAGCTCTTTCTTTGATTATATACTCTCTTACTCTGGTGCCACTGCTCAAATATGTTCTTATTGTATTAAGAGCAAATGACAATGGTCAAGGTGGAACATTGGCTCTTTATTCCTTGCTCTGTCGACATGCAAACATCAGAACCATTCCCAATCAGCATCATACTGATGAAGAGCTAACAACATATAGTCGGTCTACCATCCGTGAGAAGTCATTTGCTGCGAAAACCAAGAGATGGTTAGAGGAAACACCTTACATGAAAAATATCATTCTTATGCTCGCCCTTGTTGGTACCTGCATGGTGATTGGAGATGGTATTCTTACCCCAGCTATATCTGTTTTGTCTGCTGTTGGTGGCATCAAGGTGAATCATGCTGATTTGAGTAACGGAGTAGTTGTGCTGGTTGCTGTTGTAATATTAGTAGGGTTATTCAGCGTGCAACATTATGGTACAGATAGAGTTGGTTGGCTCTTTGCTCCAATTGTCCTACTTTGGTTTCTACTAATTGGAGGTATAGGCATATTCAACATCTGTAAATATGGAAGCAGTGTTCTAAAAGCTTTTTCACCACTGTATATATACCGCTATCTACAACGAGAAGGCAAAGATGGTTGGCTTTCCCTTGGTGGCATTTTGCTCAGCATAACAGGGACAGAGGCTCTTTTTGCTGACCTTGCACACTTTCCAGTCTCTTCTGTACAGATTGCATTTACTCTGCTAGTGTTTCCTTGCCTTCTTTTAGCCTACTCTGGACAGGCTGCTTACCTTATGCATAACTTGGACCATTCAAAAGATGCGTTTTATCGTTCTATTCCAGACAAAATATACTGGCCAGTATTTGTTGTTGCAACATTAGCAGCTATAGTTGCAAGCCAGGCCACAATATCCGCAACCTTTTCAATTATTAAGCAAGCCAATGCTCATGGCTGTTTCCCGAGAATAAAAGTTGTACATACATCAAAGAAGTTCCTTGGCCAGATATATATTCCAGATATCAATTGGATCCTTATGATTCTATGCATTGCTGTTACTGCTGGGTTTAAAAATCAAAGTCAGATTGGAAATGCATATGGTACTGCAGTTGTGCTAGTCATGCTGGTTACAACATTGCTTATGATTTTGATCATGATACTTGTGTGGCGCTGCCATTGGATTCTGGTGGTGGTGTTCACCGGCTTATCGTTGATTGTGGAATGCACATACTTCTCTGCTGTTCTCTTCAAAGTTGATCAAGGTGGATGGGCTCCCCTAGCAATTGCTGGAGCATTTCTTCTGATCATGTATGTCTGGCATTATGGCTCAGTGAAACGCTACGAGTTTGAGATGCATAGTAAGGTCTCAATGGCATGGATTCTCGGGCTTGGACCGAGTTTAGGACTTGTTCGTGTCCCGGGAATAGGGTTAGTATACACAGAGCTTGCAAGTGGAGTACCCCACATCTTTTCACATTTCATCACAAACCTACCAGCCATCCATTCTGTTGTTGTTTTTGTATGTGTGAAGTATCTCCCTGTCTACACTGTCCCAGAAGACGAAAGATTCCTTGTAAAGAGAATTGGACCCAAGAACTTCCACATGTTTCGTTGCGTGGCGCGATATGGATACAAAGATCTGCACAAGAAAGATGAGGATTTTGAGAAAAAGCTTTTCCACAACCTCTTTGTGTTTGTCAAGCTAGAGTCCATGATGGAAGGGTGCTCAGATTCAGATGACTACAGCTTATATGATGAGCAGACTGAGAGGTCAACACAAGGCCTATTGAACAATAACACAAACACAGCTGCATTGAATATGGATCCAACAGTTTCATCAGTGGATTCAATTGTATCAGTCTCATCTCCATTGCACATTAATGCTACTATTCAATCCTCTGGTCATGTTAGCAGCCACACCGAGGTCGATGAAGTTGAGTTCTTAAACAACTGCAGGGATGCTGGGGTGGTTCACATTCTAGGAAACACAGTTGTCAGGGCAAGGAGGGATTCAAGATTCCACAAGAAAATAGCTGTTGATTATATATATGCATTTCTCAGGAAGATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTATTAAATGTTGGTCAGGTTTTCTATGTATAG

Predicted protein sequences of Glyma09g05830

Limit To All Plant Sequences

>Glyma09g05830.1   sequence type=predicted peptide   gene model=Glyma09g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTGFDEDGDNRGGMWVLEQKIDQPMDEEAERLKNTYREKKLSTLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPQQIDNQEDVIGALSLIIYSLTLVPLLKYVLIVLRANDNGQGGTLALYSLLCRHANIRTIPNQHHTDEELTTYSRSTIREKSFAAKTKRWLEETPYMKNIILMLALVGTCMVIGDGILTPAISVLSAVGGIKVNHADLSNGVVVLVAVVILVGLFSVQHYGTDRVGWLFAPIVLLWFLLIGGIGIFNICKYGSSVLKAFSPLYIYRYLQREGKDGWLSLGGILLSITGTEALFADLAHFPVSSVQIAFTLLVFPCLLLAYSGQAAYLMHNLDHSKDAFYRSIPDKIYWPVFVVATLAAIVASQATISATFSIIKQANAHGCFPRIKVVHTSKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVLVMLVTTLLMILIMILVWRCHWILVVVFTGLSLIVECTYFSAVLFKVDQGGWAPLAIAGAFLLIMYVWHYGSVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEDERFLVKRIGPKNFHMFRCVARYGYKDLHKKDEDFEKKLFHNLFVFVKLESMMEGCSDSDDYSLYDEQTERSTQGLLNNNTNTAALNMDPTVSSVDSIVSVSSPLHINATIQSSGHVSSHTEVDEVEFLNNCRDAGVVHILGNTVVRARRDSRFHKKIAVDYIYAFLRKICRENSVIFNVPHESLLNVGQVFYV*

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