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Report for Sequence Feature Glyma09g05781

Feature Type:gene_model
Chromosome:Gm09
Start:4541121
stop:4547112
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g05781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31040AT Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein | chr1:11069793-11072182 REVERSE LENGTH=243 SoyBaseE_val: 5.00E-99ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PF04640PFAM PLATZ transcription factor JGI ISS
UniRef100_I1MGV8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGV8_SOYBN SoyBaseE_val: 2.00E-168ISS
UniRef100_Q948W7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc-binding protein n=1 Tax=Pisum sativum RepID=Q948W7_PEA SoyBaseE_val: 1.00E-123ISS

Expression Patterns of Glyma09g05781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g05781 not represented in the dataset
Glyma09g05781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05781
ParalogEvidenceComments
Glyma15g17040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g052400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g05781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g05781
>Glyma09g05781.1   sequence type=CDS   gene model=Glyma09g05781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGACATGATGGGCACAACAACAACAACAACATCATCATCATCAGGAGGGTGTGGTGGGGGAGGAGACATGAGTATGAATATGAATGAGAAGCCTGCATGGCTAGAGAGGTTGATGGCTGAGACATTCTTTGGTGGTTGTGGGGTCCACCAGGATCGCAGGAAGAACGAGAAGAACGTCTTTTGCTTGCACTGTTGCCTTAGCATCTGCCCCCACTGCCTCTCTTCCCACCGCTCTCACCCTCTACTCCAGGTGCGAAGGTATGTTTACCACGATGTGATTCGATTAGATGATCTGGAAAAACTCATTGATTGTTCCAATATTCAGCCCTATACTATAAACAGCGCCAAAGTAGTATTCTTAAATCAGAGGCCACAATCAAGGACATGCAAAGGTCTTGCCAACGCTTGCTTCACTTGTGACAGGATTCTTCAGGAGCCATTTCATTTCTGTTCTCTATCATGCAAGGTTGATTACATGGTGTACGCGGGTCAAAGCTTGGGCAGCATTTTACATCGATTCGATGAATCTGATTTTGCAATTTCCCAGTTCGAGGGTCTAAGAGTGGATGGCTCAGAGGTAATTGATGAAGATACCCAATTTGCCCCTAGTTCCTCCTACTCCAACACTGAGGCCACTAGCAATTCGGTAATTTCATGCGAACCTAATAACAACGTGAAGAAGGGCAAGGCCAACAGGTTCCTTCCTGGGATCGTCCTCTCTCTTGGCAGCAGAAGAAAGGGTGCTCCTCATAGGGCCCCTCTCTCCTAA
Predicted protein sequences of Glyma09g05781
>Glyma09g05781.1   sequence type=predicted peptide   gene model=Glyma09g05781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRDMMGTTTTTTSSSSGGCGGGGDMSMNMNEKPAWLERLMAETFFGGCGVHQDRRKNEKNVFCLHCCLSICPHCLSSHRSHPLLQVRRYVYHDVIRLDDLEKLIDCSNIQPYTINSAKVVFLNQRPQSRTCKGLANACFTCDRILQEPFHFCSLSCKVDYMVYAGQSLGSILHRFDESDFAISQFEGLRVDGSEVIDEDTQFAPSSSYSNTEATSNSVISCEPNNNVKKGKANRFLPGIVLSLGSRRKGAPHRAPLS*






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