Glyma09g05700 - SoyBase

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Report for Sequence Feature Glyma09g05700

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4466624
stop:	4467358
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20000	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr4:10838367-10838993 FORWARD LENGTH=208	SoyBase	E_val: 7.00E-10	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1L165	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L165_SOYBN	SoyBase	E_val: 2.00E-179	ISS
UniRef100_I6ZTV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Phaseolus vulgaris RepID=I6ZTV0_PHAVU	SoyBase	E_val: 2.00E-08	ISS

Proteins Associated with Glyma09g05700

Locus	Gene Symbol	Protein Name
	VQ43	VQ motif containing protein gene 43

Expression Patterns of Glyma09g05700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05700

Paralog	Evidence	Comments
Glyma15g16990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g051900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g05700

Limit To All Plant Sequences

>Glyma09g05700.1   sequence type=CDS   gene model=Glyma09g05700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCCACTACTGATCAATGGATGCAGTTCTATCAACAACCTCTAATGGATAGCCATGGCCATGATCATGATCATGATCATGATCATCATGCTTTGGCACCAAACACCACAGAAGGCTTCTCTAGTTCTCCCACTCCTACCATGCCTTCATCAGAGAGCAATAGCATCTTGAGCCAATTGAGTCCAAAGGGTAATGTATCCAAACCAATAAGAAGAAGGTCTAGAGCCTCTAAGAGAACCCCAACTACACTTCTCAATGCCAACCCCACCAATTTTAGAGCATTAGTACAACAATTCACAGGGTGTCCTCGCACAACCATGTCAACACTAGGGGTCCATAAGGGCCCTATTACCTTGAATTTTCAACAAGGAAATAGTAGTACTGAACAAAAGGTTCATCACCACAACACAAGTAGTAGGGTAGTGCTACCAGTTAGTGGCAGAAGCTACAACAACAACAACAACAACAACCAGTTTCATCAAGTGCCTGCACCGTTTCCTAATTGGCAGAAGCAAGAAGAACAACAGCAACAATTGCCTCAGCAGAGTGGTTACTCTTTTGATTATGTAAAGAACAATGGTTTTCTTCCAAGTTCGGGTAACTCAATAAGGCCTACCACTATTAGCATGGATCATGTCTCTGATGGTTTGCTCTTAGATAATGACTTTAACTTGGCTGATCTAACTGTTAATGGTTTCCCCAATGATGCTCTTTATGAGAGTGAATTATAG

Predicted protein sequences of Glyma09g05700

Limit To All Plant Sequences

>Glyma09g05700.1   sequence type=predicted peptide   gene model=Glyma09g05700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTATTDQWMQFYQQPLMDSHGHDHDHDHDHHALAPNTTEGFSSSPTPTMPSSESNSILSQLSPKGNVSKPIRRRSRASKRTPTTLLNANPTNFRALVQQFTGCPRTTMSTLGVHKGPITLNFQQGNSSTEQKVHHHNTSSRVVLPVSGRSYNNNNNNNQFHQVPAPFPNWQKQEEQQQQLPQQSGYSFDYVKNNGFLPSSGNSIRPTTISMDHVSDGLLLDNDFNLADLTVNGFPNDALYESEL*

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