Glyma09g05600 - SoyBase

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Report for Sequence Feature Glyma09g05600

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4370951
stop:	4375513
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20070	AT	Annotation by Michelle Graham. TAIR10: allantoate amidohydrolase \| chr4:10861548-10864529 FORWARD LENGTH=525	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010136	GO-bp	Annotation by Michelle Graham. GO Biological Process: ureide catabolic process	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016813	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	SoyBase	N/A	ISS
GO:0047652	GO-mf	Annotation by Michelle Graham. GO Molecular Function: allantoate deiminase activity	SoyBase	N/A	ISS
PTHR11014	Panther	PROTEASE M20-RELATED	JGI		ISS
PTHR11014:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01546	PFAM	Peptidase family M20/M25/M40	JGI		ISS
PF07687	PFAM	Peptidase dimerisation domain	JGI		ISS
UniRef100_A9GYV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Allantoate amidohydrolase n=2 Tax=Glycine max RepID=A9GYV1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L153	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L153_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g05600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g05600 not represented in the dataset	Glyma09g05600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05600

Paralog	Evidence	Comments
Glyma15g16870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g050800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g05600

Limit To All Plant Sequences

>Glyma09g05600.3   sequence type=transcript   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTATTCCCTGCTGTGCCTTCATTCGGTCCCTTGAGATTGGGAAGCATTGGTGGCTAGCTAAGCTAAGCTAAAACTAAACTCTTTCAGTTTGTTTTAGCTTCAGCTTCTTCTGCTTCTTTTGCTTTTTCCACCACAACCACAACCATGTCTTCTGCCACTGCCTCCAACACTTTCTTCCTTCACTCTTGTTTCCTCCTCTTCTGTCTCCTCTCGGCTCCTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCAAGGCTTTATGAGCTTGGGAAGGTGAGTGATGCTAGCGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGCGTTGATGGTGCTAATGCAAATGCTGAAGCTTTATTGATTGGATCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCACTAGGAATTGTCTCTGCAATATCTGCCTTGAAGGCTATGCATGTCAATGGAAAGCTACAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTTAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGGCACAACATTGGAGATATCTGATAAGAGGGAGGTGATGATTAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAAGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAGTCTGTTTGGGGCTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTCAGAGGGTCACAAGGTCATGCTGGAACTGTTCCAATGTCGATGCGCCAGGATCCTATGGCTGCTGCAGCAGAACAAATTGTAGTCTTGGAAAGCCTCTGTAAACACCCTGAAGAATACCTTTCTTATGATGGTCATTGCAGTGATTCAACAGTGAAATCACTGTCAACCTCACTTGTTTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACATATACCGTGGATATACGAGCAATTGATGACCTTGGACGCGAGGCTGTTATCTATGATTTATCTAAACAAATTTACCAAATATGTGACAAGCGTTCGGTTTCCTGTATTATTGAACACAAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCACAGCTCAAGTCTGCAGCTTATTCTGCACTCAAGAAGATGGAGGGTGACATTCAAGATGAAGTGCCAACGTTAATGAGTGGAGCAGGGCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGTTGTCGCGGAGGAATAAGTCATTCTCCACAAGAGCATGTGCTAGACAATGATGTCTGGGCGGCCAGTTTAGCAACCTTGTCATTTCTGGAAAACCTATCATAAGTGATATGGTAACTGTGTAAAGCAATAAATAGATATTATAGCTTGTAATTATAGGTTAATTTATTGAGTTAATTCATGAGTTAACTCTTTTTCTTTTAGTTGCTTGTGTCTTATAGTTGTGTAATTGAATTTTTGGTTTTAGTTATCCTGTTATCAGGAAACGGCTCCAAGTTGTTTATCATGTTCTTTGCCACTGTCAAATTAAAACTTATGACTGATTTTATTTTTGAATTTAATAGGTATATAATGTTAGTTTAAATGTCATCAAGTCATTTTAGAATGTTAAAAGTCATTATTAGTATGATGACTTATAAGGTAATTATTATAAAATTTAATAAATTTGTCTTACATGACAACTT

>Glyma09g05600.4   sequence type=transcript   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTATTCCCTGCTGTGCCTTCATTCGGTCCCTTGAGATTGGGAAGCATTGGTGGCTAGCTAAGCTAAGCTAAAACTAAACTCTTTCAGTTTGTTTTAGCTTCAGCTTCTTCTGCTTCTTTTGCTTTTTCCACCACAACCACAACCATGTCTTCTGCCACTGCCTCCAACACTTTCTTCCTTCACTCTTGTTTCCTCCTCTTCTGTCTCCTCTCGGCTCCTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCAAGGCTTTATGAGCTTGGGAAGGTGAGTGATGCTAGCGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGCGTTGATGGTGCTAATGCAAATGCTGAAGCTTTATTGATTGGATCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCACTAGGAATTGTCTCTGCAATATCTGCCTTGAAGGCTATGCATGTCAATGGAAAGCTACAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTTAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGGCACAACATTGGAGATATCTGATAAGAGGGAGGTGATGATTAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAAGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAGTCTGTTTGGGGCTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTCAGAGGGTCACAAGGTCATGCTGGAACTGTTCCAATGTCGATGCGCCAGGATCCTATGGCTGCTGCAGCAGAACAAATTGTAGTCTTGGAAAGCCTCTGTTACATATACCGTGGATATACGAGCAATTGATGACCTTGGACGCGAGGCTGTTATCTATGATTTATCTAAACAAATTTACCAAATATGTGACAAGCGTTCGGTTTCCTGTATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCACAGCTCAAGTCTGCAGCTTATTCTGCACTCAAGAAGATGGAGGGTGACATTCAAGATGAAGTGCCAACGTTAATGAGTGGAGCAGGGCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGTTGTCGCGGAGGAATAAGTCATTCTCCACAAGAGCATGTGCTAGACAATGATGTCTGGGCGGCCAGTTTAGCAACCTTGTCATTTCTGGAAAACCTATCATAAGTGATATGGTAACTGTGTAAAGCAATAAATAGATATTATAGCTTGTAATTATAGGTTAATTTATTGAGTTAATTCATGAGTTAACTCTTTTTCTTTTAGTTGCTTGTGTCTTATAGTTGTGTAATTGAATTTTTGGTTTTAGTTATCCTGTTATCAGGAAACGGCTCCAAGTTGTTTATCATGTTCTTTGCCACTGTCAAATTAAAACTTATGACTGATTTTATTTTTGAATTTAATAGGTATATAATGTTAGTTTAAATGTCATCAAGTCATTTTAGAATGTTAAAAGTCATTATTAGTATGATGACTTATAAGGTAATTATTATAAAATTTAATAAATTTGTCTTACATGACAACTT

Coding sequences of Glyma09g05600

Limit To All Plant Sequences

>Glyma09g05600.1   sequence type=CDS   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTGCCACTGCCTCCAACACTTTCTTCCTTCACTCTTGTTTCCTCCTCTTCTGTCTCCTCTCGGCTCCTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCAAGGCTTTATGAGCTTGGGAAGGTGAGTGATGCTAGCGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGCGTTGATGGTGCTAATGCAAATGCTGAAGCTTTATTGATTGGATCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCACTAGGAATTGTCTCTGCAATATCTGCCTTGAAGGCTATGCATGTCAATGGAAAGCTACAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTTAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGGCACAACATTGGAGATATCTGATAAGAGGGAGGTGATGATTAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAAGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAGTCTGTTTGGGGCTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTCAGAGGGTCACAAGGTCATGCTGGAACTGTTCCAATGTCGATGCGCCAGGATCCTATGGCTGCTGCAGCAGAACAAATTGTAGTCTTGGAAAGCCTCTGTAAACACCCTGAAGAATACCTTTCTTATGATGGTCATTGCAGTGATTCAACAGTGAAATCACTGTCAACCTCACTTGTTTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACATATACCGTGGATATACGAGCAATTGATGACCTTGGACGCGAGGCTGTTATCTATGATTTATCTAAACAAATTTACCAAATATGTGACAAGCGTTCGGTTTCCTGTATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCACAGCTCAAGTCTGCAGCTTATTCTGCACTCAAGAAGATGGAGGGTGACATTCAAGATGAAGTGCCAACGTTAATGAGTGGAGCAGGGCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGTTGTCGCGGAGGAATAAGTCATTCTCCACAAGAGCATGTGCTAGACAATGATGTCTGGGCGGCCAGTTTAGCAACCTTGTCATTTCTGGAAAACCTATCATAA

>Glyma09g05600.3   sequence type=CDS   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTGCCACTGCCTCCAACACTTTCTTCCTTCACTCTTGTTTCCTCCTCTTCTGTCTCCTCTCGGCTCCTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCAAGGCTTTATGAGCTTGGGAAGGTGAGTGATGCTAGCGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGCGTTGATGGTGCTAATGCAAATGCTGAAGCTTTATTGATTGGATCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCACTAGGAATTGTCTCTGCAATATCTGCCTTGAAGGCTATGCATGTCAATGGAAAGCTACAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTTAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGGCACAACATTGGAGATATCTGATAAGAGGGAGGTGATGATTAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAAGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAGTCTGTTTGGGGCTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTCAGAGGGTCACAAGGTCATGCTGGAACTGTTCCAATGTCGATGCGCCAGGATCCTATGGCTGCTGCAGCAGAACAAATTGTAGTCTTGGAAAGCCTCTGTAAACACCCTGAAGAATACCTTTCTTATGATGGTCATTGCAGTGATTCAACAGTGAAATCACTGTCAACCTCACTTGTTTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACATATACCGTGGATATACGAGCAATTGATGACCTTGGACGCGAGGCTGTTATCTATGATTTATCTAAACAAATTTACCAAATATGTGACAAGCGTTCGGTTTCCTGTATTATTGAACACAAGGTGCTGTGA

>Glyma09g05600.4   sequence type=CDS   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTGCCACTGCCTCCAACACTTTCTTCCTTCACTCTTGTTTCCTCCTCTTCTGTCTCCTCTCGGCTCCTTCCTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCAAGGCTTTATGAGCTTGGGAAGGTGAGTGATGCTAGCGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGCGTTGATGGTGCTAATGCAAATGCTGAAGCTTTATTGATTGGATCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCACTAGGAATTGTCTCTGCAATATCTGCCTTGAAGGCTATGCATGTCAATGGAAAGCTACAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTTAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATTTTGCCTGGCACAACATTGGAGATATCTGATAAGAGGGAGGTGATGATTAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAAGAAAGTCTTTTAAAGCTCAAGTATGACCCAAAGTCTGTTTGGGGCTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTCAGAGGGTCACAAGGTCATGCTGGAACTGTTCCAATGTCGATGCGCCAGGATCCTATGGCTGCTGCAGCAGAACAAATTGTAGTCTTGGAAAGCCTCTGTTACATATACCGTGGATATACGAGCAATTGA

Predicted protein sequences of Glyma09g05600

Limit To All Plant Sequences

>Glyma09g05600.1   sequence type=predicted peptide   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSATASNTFFLHSCFLLFCLLSAPSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDASGYLERTFLSPASMRAINLIRKWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLQKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPGTTLEISDKREVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDGHCSDSTVKSLSTSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKHDAGAVICDSDLSSQLKSAAYSALKKMEGDIQDEVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAASLATLSFLENLS*

>Glyma09g05600.3   sequence type=predicted peptide   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSATASNTFFLHSCFLLFCLLSAPSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDASGYLERTFLSPASMRAINLIRKWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLQKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPGTTLEISDKREVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDGHCSDSTVKSLSTSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKVL*

>Glyma09g05600.4   sequence type=predicted peptide   gene model=Glyma09g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSATASNTFFLHSCFLLFCLLSAPSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDASGYLERTFLSPASMRAINLIRKWMEDAGLRTWVDQMGNVHGRVDGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLQKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPGTTLEISDKREVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCYIYRGYTSN*

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