Report for Sequence Feature Glyma09g05340
Feature Type: gene_model
Chromosome: Gm09
Start: 4138807
stop: 4140617
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g05340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G30870 AT
Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr1:10991535-10992885 FORWARD LENGTH=349
SoyBase E_val: 1.00E-105 ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0010054 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004601 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peroxidase activity
SoyBase N/A ISS
GO:0020037 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heme binding
SoyBase N/A ISS
PF00141 PFAM
Peroxidase
JGI ISS
UniRef100_G7JMV9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=1 Tax=Medicago truncatula RepID=G7JMV9_MEDTR
SoyBase E_val: 9.00E-116 ISS
UniRef100_I1L130 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L130_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g05340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g05340
Paralog Evidence Comments
Glyma15g16710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g05340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g048400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g05340
Coding sequences of Glyma09g05340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g05340.1 sequence type=CDS gene model=Glyma09g05340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAAACTCTTTCCTCTCATTGCTTATTCTCTTGGTTCTTTACATTTTTTCAGCCTCAGCCCAACCTTATGAAGACTATGACGATAAGTCATCCCTTTACCCCACAAAAAGTGACACTGTCTTCTCTCTCGAAGTCCCAACATTAGATGAAACCACCTTTGATAATCTCCTATCCTTTGGTTACTACCGTAAAACCTGCCCCCAATTCGAGTCCATCCTACACAACAAAGTCAAAGAATGGATCCTGAAGGACTACACTCTAGCAGCTAGTCTCATGAGGCTCCACTTCCATGATTGCTCTGTCAGGGGATGTGATGGTTCCATTCTGTTGAAGCATGATGGAAGTGAGAGGACAGCACATGCTAGCAAGACACTGAGAGGGTTTGAAGTGGTGGATGATATCAAGGCAGAGTTAGAGAAACAGTGCCCCAAGACTGTGTCTTGTGCTGACATTCTCACTGCTGCTGCAAGGGATGCCACGTTTGAGTTAAGGTGGGCCTTATTGGGCTGTTCCTTATGGTGGGAAGAATGGGGAAAGGTATCCATTGCTAAGGAAGCTGATATGGTGCCTATGGGCCATGAAAACATTACTTCCTTGATTGAGTTTTTCCAATCCAGGGGCATGACAAGGGCTCATACCATTGGAAGAATTTCATGTGGCTCCATTCAATACAGGCTGTACAACAACCAAGGAACAGGCAAACCAGACCCAACCCTAGATCCCAAGTATGTAAACTTCTTGCAAAGTAAGTGTAGATGGGCCTCAGAGTATGTGGATCTTGATGCTACAACACCAAAGACCTTTGACAATGTTTACTACATTAATCTCCAAAAGAAAATGGGGTTGTTATCTACTGATCAGTTGCTATACTCTGATCCAAGGACTTCTCCCCTTGTTTCTGCATTGATTGCTTCTCACTCAGTTTTTGAGCACCAGTTTGCTGTGTCCATGGGAAAGCTTGGCATTGTTGATGTTCTCACAGACCAGGATGAAGGAGAAATCAGGACCAACTGCAATTTTGTCAATGCTTATTGA
Predicted protein sequences of Glyma09g05340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g05340.1 sequence type=predicted peptide gene model=Glyma09g05340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNSFLSLLILLVLYIFSASAQPYEDYDDKSSLYPTKSDTVFSLEVPTLDETTFDNLLSFGYYRKTCPQFESILHNKVKEWILKDYTLAASLMRLHFHDCSVRGCDGSILLKHDGSERTAHASKTLRGFEVVDDIKAELEKQCPKTVSCADILTAAARDATFELRWALLGCSLWWEEWGKVSIAKEADMVPMGHENITSLIEFFQSRGMTRAHTIGRISCGSIQYRLYNNQGTGKPDPTLDPKYVNFLQSKCRWASEYVDLDATTPKTFDNVYYINLQKKMGLLSTDQLLYSDPRTSPLVSALIASHSVFEHQFAVSMGKLGIVDVLTDQDEGEIRTNCNFVNAY*