SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34900 | AT | Annotation by Michelle Graham. TAIR10: Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386 | SoyBase | E_val: 1.00E-93 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0010030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR22880 | Panther | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | JGI | ISS | |
| PTHR22880:SF80 | Panther | IMB1 (IMBIBITION-INDUCIBLE 1), DNA BINDING | JGI | ISS | |
| PF00439 | PFAM | Bromodomain | JGI | ISS | |
| UniRef100_G7L726 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Global transcription factor group n=1 Tax=Medicago truncatula RepID=G7L726_MEDTR | SoyBase | E_val: 7.00E-100 | ISS |
| UniRef100_UPI000233CA79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CA79 related cluster n=1 Tax=unknown RepID=UPI000233CA79 | SoyBase | E_val: 0 | ISS |
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Glyma09g05221 not represented in the dataset |
Glyma09g05221 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g16545 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g047100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g05221.1 sequence type=CDS gene model=Glyma09g05221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTGCATGCAGCTTGAGGAGCAAGTTGCTGAGGTTCAAAAGTACTACAGTACCATCAATGATCAAGTTAATAATGCCAAAGACAAAAGCCAGGAGAAGCATGTTATTGGCACCAAAAGGTCACGACAAGGTGGATCAAGTAAGGAAGCTAATTCTTCAAACACAATGAAAGAGGTTATGCACCAGTTTTCCACAATATTCCATCAGGCAAGTATAACTCAGCATAGATGGGCTTGGCCCTTCATGGATCCTGTAGATGTTGAAGGTCTTGGGCTGAGTGACTATTATCAGATTATCGAAAAGCCTATGGATTTCGGTACGATAAAAAGGAAAATGGATGCTAAGGATGGTTCTGGTTATAAGAACGTGCGTCAGATATATTCTGATGTCACCCTGGTTTTTAAGAATGCAATGAAATACAATGATGAAAAAACTGATATCCACATTATGGCCAAGACATTGCGGGAAAAATTTGAGAAGAAATGGCTGCAGCTATTACCTAAAGTTGCTCAGGCGGAAAGTGAAAAGGAAGAAGCACGTGCACTGTTGAAAGCGAAGCTTGCTGAAGAAGCTGCTTATGCCAATATGACAAAGGATATAAGACATGCGCTGTGCGATGTTGATGAGCAGTTAAAGAATCTCAAAGAAATGGTGATTAAGAAGTGCAGGAAACTATCAACTCATGAGAAACTGGCACTTAAGAAAAATTTAAACAGACTGAATGGTGATAATCTCCTCAAGGCAATGGCCATAATTCATGAGATTGACCCAACCTTCCAACATGATGCTCCACAGGTCGACCTTGACCTTGATTGTCAGAGTGACTTCATACTGTGGAAACTAAACATGTTTGTCAAAGAAGCACTGGAAGATCAGGACAAAGCTGTTGCTGAGGACATGGCTGTTAACCACAATGTTAACACTCAGGACCAGAAAAACACCAACAAAAGGAGGAAACTGTGA
>Glyma09g05221.1 sequence type=predicted peptide gene model=Glyma09g05221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCMQLEEQVAEVQKYYSTINDQVNNAKDKSQEKHVIGTKRSRQGGSSKEANSSNTMKEVMHQFSTIFHQASITQHRWAWPFMDPVDVEGLGLSDYYQIIEKPMDFGTIKRKMDAKDGSGYKNVRQIYSDVTLVFKNAMKYNDEKTDIHIMAKTLREKFEKKWLQLLPKVAQAESEKEEARALLKAKLAEEAAYANMTKDIRHALCDVDEQLKNLKEMVIKKCRKLSTHEKLALKKNLNRLNGDNLLKAMAIIHEIDPTFQHDAPQVDLDLDCQSDFILWKLNMFVKEALEDQDKAVAEDMAVNHNVNTQDQKNTNKRRKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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