Glyma09g05010 - SoyBase

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Report for Sequence Feature Glyma09g05010

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3798127
stop:	3800656
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02500	AT	Annotation by Michelle Graham. TAIR10: UDP-xylosyltransferase 2 \| chr4:1101638-1103345 FORWARD LENGTH=461	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0009969	GO-bp	Annotation by Michelle Graham. GO Biological Process: xyloglucan biosynthetic process	SoyBase	N/A	ISS
GO:0010411	GO-bp	Annotation by Michelle Graham. GO Biological Process: xyloglucan metabolic process	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0033843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan 6-xylosyltransferase activity	SoyBase	N/A	ISS
GO:0035252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-xylosyltransferase activity	SoyBase	N/A	ISS
KOG4748	KOG	Subunit of Golgi mannosyltransferase complex	JGI		ISS
PF05637	PFAM	galactosyl transferase GMA12/MNN10 family	JGI		ISS
UniRef100_G7JLH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan 6-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JLH4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L100	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L100_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g05010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g05010 not represented in the dataset	Glyma09g05010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05010

Paralog	Evidence	Comments
Glyma15g15820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g044800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g05010

Limit To All Plant Sequences

>Glyma09g05010.2   sequence type=transcript   gene model=Glyma09g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAGTGCTGCCTTGGAACACGGCGCGTCCGGCAGATTCATCGCGCCTGCCGCCACAGCACCGTGACCTTCCTCTGCCTCTTCCTCACGCTGGTCGTCCTCCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCAATGAGATCCGTCACCACCTCTCCGCCGCCCGCGCCCGCCGCGTCCTCGAAGAAGTCAAACCCGAATCCCTATCCTCCTCCGAATCCAACAACTACGCGACCTTCGATCTCTCCAAGATCCTCGTCGACGAGCCCCCCACCGACGACGAAAAACCTAACCCTAACGCGCCCTACACCCTCGGCCCCAAAATCTCAAATTGGGACGAACAACGCTCTTCATGGCTATCCAACAACCCGGACTACCCCAACTTCATCGGACCCAACAAACCCCGCGTCCTCCTCGTAACCGGTTCGTCTCCCAAACCGTGCGAAAACCCTGTCGGAGACCACTACCTTGTCAAATCGATAAAGAACAAGATTGACTACTGCAGGGTCCACGGGATTGAGATTTTCTACAACATGGCTCTCTTGGACGCGGAAATGGCAGGGTTTTGGGCCAAGCTTCCGTTGATTCGGAAGCTCTTGCTTTCTCACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCCTTTGAGGTGCCATGGGAGAGGTATAAAGATTCGAACTTTGTTATGCACGGGTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGTAGTTTTCTGTTGAGAAACTGTCAATGGTCTTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCCAAGGGGAAGATAAGAGATGAAGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGACGATCAATCTGCTATGGTTTATTTGTTGGCAACTGGGAAGGAGAAATGGGGTGACAAGGTTTACCTTGAGAATCACTACTACTTGCATGGTTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTATCACCCGGGGCTTGGTGATCATAGGTGGCCTTTGGTGACTCACTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAGCAGATGGATAGGGCCTATAACTTTGGGGATAACCAGATTTTGCAGATGTATGGATTCACTCATAAGTCACTTGGTAGCCGTAAGGTGAAGAGGGTGAGGAATGATACTAGCAATCCTCTTGAGGTTAAGGATGAGCTTGGATTGCTTCATCCTGCTTTCAAAGCTATCAAGCTCTCTTCTTCTTGATATGGTCGAGGTTTTATGATCACAATTGTGGGAAATTGCTGACAAATGTGGCTGATGCAACTACAATTATGGTCGTGCTGTGGTTGTGGTTATGGCAATGGCAATGACAACTACAGAAAATTGCAGTGAGATTTATGTGTGAACAGATTTGCCTTGGAGAAAGCTTTCGAAGGATGCAATGAATCCAATATCAATTCCTCACTTTTCCATCATATTTTGAAAAGCACACACTCTTGACTCTTGTGTAGTTGTATTCGAGTAGTTTTATTTTCAATTTTTGGGTGCACAGCGAGGATGTCACTGCATGTATAGATTAGTGGCAAACACCGGGCAATATAGCATGTCAACTATGATTTCAAAGTTTAAACTCGAACAATTGGACGGTTTGAGACTCTTGAGTAAACAATAGATCATATATTCTAGCTTTACTGTATTGTCAGGAACTATTCCGGCCACACTAGTCAGGAAAACATCCCACCTTGCTTGGTGTATTTGCAGTGTCGGTCCTGATATTTTTGTGGGTTGAGTATGAAGTAGATGAGGTTTCTTTTTATACAAGTATATTAAAATGTTC

Coding sequences of Glyma09g05010

Limit To All Plant Sequences

>Glyma09g05010.1   sequence type=CDS   gene model=Glyma09g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAGTGCTGCCTTGGAACACGGCGCGTCCGGCAGATTCATCGCGCCTGCCGCCACAGCACCGTGACCTTCCTCTGCCTCTTCCTCACGCTGGTCGTCCTCCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCAATGAGATCCGTCACCACCTCTCCGCCGCCCGCGCCCGCCGCGTCCTCGAAGAAGTCAAACCCGAATCCCTATCCTCCTCCGAATCCAACAACTACGCGACCTTCGATCTCTCCAAGATCCTCGTCGACGAGCCCCCCACCGACGACGAAAAACCTAACCCTAACGCGCCCTACACCCTCGGCCCCAAAATCTCAAATTGGGACGAACAACGCTCTTCATGGCTATCCAACAACCCGGACTACCCCAACTTCATCGGACCCAACAAACCCCGCGTCCTCCTCGTAACCGGTTCGTCTCCCAAACCGTGCGAAAACCCTGTCGGAGACCACTACCTTGTCAAATCGATAAAGAACAAGATTGACTACTGCAGGGTCCACGGGATTGAGATTTTCTACAACATGGCTCTCTTGGACGCGGAAATGGCAGGGTTTTGGGCCAAGCTTCCGTTGATTCGGAAGCTCTTGCTTTCTCACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCCTTTGAGGTGCCATGGGAGAGGTATAAAGATTCGAACTTTGTTATGCACGGGTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGTAGTTTTCTGTTGAGAAACTGTCAATGGTCTTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCCAAGGGGAAGATAAGAGATGAAGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGACGATCAATCTGCTATGGTTTATTTGTTGGCAACTGGGAAGGAGAAATGGGGTGACAAGGTTTACCTTGAGAATCACTACTACTTGCATGGTTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTATCACCCGGGGCTTGGTGATCATAGGTGGCCTTTGGTGACTCACTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAGCAGATGGATAGGGCCTATAACTTTGGGGATAACCAGATTTTGCAGATGTATGGATTCACTCATAAGTCACTTGGTAGCCGTAAGGTGAAGAGGGTGAGGAATGATACTAGCAATCCTCTTGAGGTTAAGGATGAGCTTGGATTGCTTCATCCTGCTTTCAAAGCTATCAAGCTCTCTTCTTCTTGA

>Glyma09g05010.2   sequence type=CDS   gene model=Glyma09g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAGTGCTGCCTTGGAACACGGCGCGTCCGGCAGATTCATCGCGCCTGCCGCCACAGCACCGTGACCTTCCTCTGCCTCTTCCTCACGCTGGTCGTCCTCCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCAATGAGATCCGTCACCACCTCTCCGCCGCCCGCGCCCGCCGCGTCCTCGAAGAAGTCAAACCCGAATCCCTATCCTCCTCCGAATCCAACAACTACGCGACCTTCGATCTCTCCAAGATCCTCGTCGACGAGCCCCCCACCGACGACGAAAAACCTAACCCTAACGCGCCCTACACCCTCGGCCCCAAAATCTCAAATTGGGACGAACAACGCTCTTCATGGCTATCCAACAACCCGGACTACCCCAACTTCATCGGACCCAACAAACCCCGCGTCCTCCTCGTAACCGGTTCGTCTCCCAAACCGTGCGAAAACCCTGTCGGAGACCACTACCTTGTCAAATCGATAAAGAACAAGATTGACTACTGCAGGGTCCACGGGATTGAGATTTTCTACAACATGGCTCTCTTGGACGCGGAAATGGCAGGGTTTTGGGCCAAGCTTCCGTTGATTCGGAAGCTCTTGCTTTCTCACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCCTTTGAGGTGCCATGGGAGAGGTATAAAGATTCGAACTTTGTTATGCACGGGTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGTAGTTTTCTGTTGAGAAACTGTCAATGGTCTTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCCAAGGGGAAGATAAGAGATGAAGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGACGATCAATCTGCTATGGTTTATTTGTTGGCAACTGGGAAGGAGAAATGGGGTGACAAGGTTTACCTTGAGAATCACTACTACTTGCATGGTTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTATCACCCGGGGCTTGGTGATCATAGGTGGCCTTTGGTGACTCACTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAGCAGATGGATAGGGCCTATAACTTTGGGGATAACCAGATTTTGCAGATGTATGGATTCACTCATAAGTCACTTGGTAGCCGTAAGGTGAAGAGGGTGAGGAATGATACTAGCAATCCTCTTGAGGTTAAGGATGAGCTTGGATTGCTTCATCCTGCTTTCAAAGCTATCAAGCTCTCTTCTTCTTGA

Predicted protein sequences of Glyma09g05010

Limit To All Plant Sequences

>Glyma09g05010.1   sequence type=predicted peptide   gene model=Glyma09g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLECCLGTRRVRQIHRACRHSTVTFLCLFLTLVVLRGTIGAGKFGTPEQDFNEIRHHLSAARARRVLEEVKPESLSSSESNNYATFDLSKILVDEPPTDDEKPNPNAPYTLGPKISNWDEQRSSWLSNNPDYPNFIGPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKEKWGDKVYLENHYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLGSRKVKRVRNDTSNPLEVKDELGLLHPAFKAIKLSSS*

>Glyma09g05010.2   sequence type=predicted peptide   gene model=Glyma09g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLECCLGTRRVRQIHRACRHSTVTFLCLFLTLVVLRGTIGAGKFGTPEQDFNEIRHHLSAARARRVLEEVKPESLSSSESNNYATFDLSKILVDEPPTDDEKPNPNAPYTLGPKISNWDEQRSSWLSNNPDYPNFIGPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKEKWGDKVYLENHYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLGSRKVKRVRNDTSNPLEVKDELGLLHPAFKAIKLSSS*

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