Glyma09g05000 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g05000

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3781601
stop:	3790320
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g05000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06930	AT	Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 4B \| chr3:2185469-2189296 REVERSE LENGTH=534	SoyBase	E_val: 0	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0019919	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0034970	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R2 methylation	SoyBase	N/A	ISS
GO:0034971	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R17 methylation	SoyBase	N/A	ISS
GO:0034972	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R26 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008469	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0016277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: [myelin basic protein]-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0035241	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N monomethyltransferase activity	SoyBase	N/A	ISS
GO:0035242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N asymmetric methyltransferase activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG1500	KOG	Protein arginine N-methyltransferase CARM1	JGI		ISS
PTHR11006	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE	JGI		ISS
PTHR11006:SF10	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE 1	JGI		ISS
PF05185	PFAM	PRMT5 arginine-N-methyltransferase	JGI		ISS
UniRef100_G7JLH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein arginine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7JLH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MGL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g05000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g05000

Paralog	Evidence	Comments
Glyma15g15830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g05000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g044700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g05000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g05000

Limit To All Plant Sequences

>Glyma09g05000.2   sequence type=transcript   gene model=Glyma09g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGGAGTTAAAAGCATAAGCACAATGGGGATATTGTGGATGAATGGAGCATGGGGCCCACGATAGTGGAAAAACAGAAACATGCGTCGTCTATGACGCAAAATCTAGCTTGCGTCGCGAAACACCAGATACCACCACCATTCATTCATTCATTCGAGTAAGACACACTAACACTTACAACACACGCTACTCTCACTCACCCTCTCCAACATAAACATGACACCACCACTCACTGCTAGCACAAACGCACTATAAAATCCCAAACCCCAGACCAAACTGAAACCTTCTCTTCTCTCTCTCTCTCTGGCGGCTCTCAATTCCCACATCCCCAAACCCTAGTTTTGTTCCATTTCTTAAATCAAAATTTATGCATACTTCAGACACCTAGTTTCATATCATCATTCTACACACACACACCTTATATATATATATAAAAAGAGTTACAGAGCAAGACAAGTGTTGTTGTTGTTGTTGAGGTTGGAGGAAGGAACGATAATGGAGGATTCTGCGGCGCAGAAGAGGAAGCAGCGAGAGTTTGCGCTAGCGTCGGTTTCCGAGGTGTCTTCGGCTCCTTCTTCTGCTTCGCCGGGGGTTTCTCTCTTCGCCGGTGATCGTCTTCAAATTCTGAACGAATCTCGCCATGTTGCTCTCAATGCTTATCTTTCAGCTATTCAGCTATTCAGATTAGGTCCTATTGAATCGGTTTGCATGGTGGAAGAGTCTGAAGCTGACAAACAGACGTCATATTCCAGTGGAGTTGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTGTATACCAACAATGGAAGAAAGGATTCAATGTTCAAGGAGGGAACTTGCCAAATGGAACTAATGCAATAACTTCTAAAAGCAAATTTGATGAAAAGATAGAGTCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTCTTGAGAATCGTGCAGATTTCGTAGGTCGTGTAGTAATTGATGTTGGTGCTGGTAGTGGTATTTTGTCACTATTTGCTGCCCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATATGCACGAAAACTCATAGCTGGGAACCCAATTCTGGGTCAACGAATTACAGTCATTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCTGATATTCTAATCTCTGAACCCATGGGCACCTTGTTAGTTAACGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACTCCTAATGGGAAAATGTTTCCTACAGTGGGAAGGATTCACATGGCTCCTTTCAGTGATGAATATTTGTTTGTTGAAATTGCTAATAAGGCCCTGTTTTGGCGGCAACAAAACTATTATGGTGTTGATTTGACGCCCTTACATGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTGTTAATAGCTGCTCCTATGTTCCATGTGTTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTCAAATTCACAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCATGCTGGTTTGATGTACTGTTCAATGGAAGTACTGCACGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCACAGCCAATATATGTCATGGCAGGACAAGAAATCACTGGCAGGATGCACTTGATTGCTCACACTGCTCAGAGTTATACAATCTATTTAAAATTGTCAGCTAAAACGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTCAAAGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATCCATTAGCCCAAGATCAGCAACCTCAACCACTTTTACAGACACAGGATATACACATCCAATCTCAAGAGTTGGATGAAGTGGAGATGATGCAACAGCCTTCTACTAAGTCGTGTGCTCAGATTGACTCCCTCATGCAGAATGCATCATAAGTTGATGAATACTAACATGAATCACTAACATCCAGTTGGGGGAATGTGTCCGTCTTTATTTGGACATACCCCTTGCCTGTAAATTCATCAATGTTGCTCTTGTTATCTATTGAGTGGTTGTGCTGCAGATCCTATATTCAATTCTTAATTTATCAAGCAATACATTGAATCCTCAAGCCTGGTAAAGTTGGGAGCCTATGTAAAATTATTTTTTAGGTATAGAATTTGCCTTTGTAAGGGCAGTATCAGGCTCACGTGAATGTAGAAAGGGAAAAACGCTTTTTTGTTTATATGAGCGGGTGTAAACATTGCTTTTGCCAACTATTGAAGTTGAAGCCGAGTTGCTTTTGAATGTGTTAACTGGAAGTGGTTTTCAAATGGAAATTCATGCGAGGGAAAGTTTTG

Coding sequences of Glyma09g05000

Limit To All Plant Sequences

>Glyma09g05000.1   sequence type=CDS   gene model=Glyma09g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTTCATTATTATGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTCTTGAGAATCGTGCAGATTTCGTAGGTCGTGTAGTAATTGATGTTGGTGCTGGTAGTGGTATTTTGTCACTATTTGCTGCCCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATATGCACGAAAACTCATAGCTGGGAACCCAATTCTGGGTCAACGAATTACAGTCATTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCTGATATTCTAATCTCTGAACCCATGGGCACCTTGTTAGTTAACGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACTCCTAATGGGAAAATGTTTCCTACAGTGGGAAGGATTCACATGGCTCCTTTCAGTGATGAATATTTGTTTGTTGAAATTGCTAATAAGGCCCTGTTTTGGCGGCAACAAAACTATTATGGTGTTGATTTGACGCCCTTACATGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTGTTAATAGCTGCTCCTATGTTCCATGTGTTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTCAAATTCACAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCATGCTGGTTTGATGTACTGTTCAATGGAAGTACTGCACGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCACAGCCAATATATGTCATGGCAGGACAAGAAATCACTGGCAGGATGCACTTGATTGCTCACACTGCTCAGAGTTATACAATCTATTTAAAATTGTCAGCTAAAACGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTCAAAGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATCCATTAGCCCAAGATCAGCAACCTCAACCACTTTTACAGACACAGGATATACACATCCAATCTCAAGAGTTGGATGAAGTGGAGATGATGCAACAGCCTTCTACTAAGTCGTGTGCTCAGATTGACTCCCTCATGCAGAATGCATCATAA

>Glyma09g05000.2   sequence type=CDS   gene model=Glyma09g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATTCTGCGGCGCAGAAGAGGAAGCAGCGAGAGTTTGCGCTAGCGTCGGTTTCCGAGGTGTCTTCGGCTCCTTCTTCTGCTTCGCCGGGGGTTTCTCTCTTCGCCGGTGATCGTCTTCAAATTCTGAACGAATCTCGCCATGTTGCTCTCAATGCTTATCTTTCAGCTATTCAGCTATTCAGATTAGGTCCTATTGAATCGGTTTGCATGGTGGAAGAGTCTGAAGCTGACAAACAGACGTCATATTCCAGTGGAGTTGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTGTATACCAACAATGGAAGAAAGGATTCAATGTTCAAGGAGGGAACTTGCCAAATGGAACTAATGCAATAACTTCTAAAAGCAAATTTGATGAAAAGATAGAGTCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTCTTGAGAATCGTGCAGATTTCGTAGGTCGTGTAGTAATTGATGTTGGTGCTGGTAGTGGTATTTTGTCACTATTTGCTGCCCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATATGCACGAAAACTCATAGCTGGGAACCCAATTCTGGGTCAACGAATTACAGTCATTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCTGATATTCTAATCTCTGAACCCATGGGCACCTTGTTAGTTAACGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACTCCTAATGGGAAAATGTTTCCTACAGTGGGAAGGATTCACATGGCTCCTTTCAGTGATGAATATTTGTTTGTTGAAATTGCTAATAAGGCCCTGTTTTGGCGGCAACAAAACTATTATGGTGTTGATTTGACGCCCTTACATGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTGTTAATAGCTGCTCCTATGTTCCATGTGTTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTCAAATTCACAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCATGCTGGTTTGATGTACTGTTCAATGGAAGTACTGCACGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCACAGCCAATATATGTCATGGCAGGACAAGAAATCACTGGCAGGATGCACTTGATTGCTCACACTGCTCAGAGTTATACAATCTATTTAAAATTGTCAGCTAAAACGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTCAAAGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATCCATTAGCCCAAGATCAGCAACCTCAACCACTTTTACAGACACAGGATATACACATCCAATCTCAAGAGTTGGATGAAGTGGAGATGATGCAACAGCCTTCTACTAAGTCGTGTGCTCAGATTGACTCCCTCATGCAGAATGCATCATAA

Predicted protein sequences of Glyma09g05000

Limit To All Plant Sequences

>Glyma09g05000.1   sequence type=predicted peptide   gene model=Glyma09g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYFHYYGQLLHQQNMLQDYVRTGTYYAAVLENRADFVGRVVIDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWRQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVLDFTKIKEEELYEIDIPLKFTATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRMHLIAHTAQSYTIYLKLSAKTWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLAQDQQPQPLLQTQDIHIQSQELDEVEMMQQPSTKSCAQIDSLMQNAS*

>Glyma09g05000.2   sequence type=predicted peptide   gene model=Glyma09g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSAAQKRKQREFALASVSEVSSAPSSASPGVSLFAGDRLQILNESRHVALNAYLSAIQLFRLGPIESVCMVEESEADKQTSYSSGVAIQFRNEEESEAFHCVYQQWKKGFNVQGGNLPNGTNAITSKSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVLENRADFVGRVVIDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWRQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVLDFTKIKEEELYEIDIPLKFTATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRMHLIAHTAQSYTIYLKLSAKTWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLAQDQQPQPLLQTQDIHIQSQELDEVEMMQQPSTKSCAQIDSLMQNAS*

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