Glyma09g04840 - SoyBase

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Report for Sequence Feature Glyma09g04840

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3652169
stop:	3660609
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g04840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15920	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr4:9030742-9033343 REVERSE LENGTH=241	SoyBase	E_val: 2.00E-94	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_I1L0Y0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0Y0_SOYBN	SoyBase	E_val: 1.00E-174	ISS
UniRef100_Q84WN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bidirectional sugar transporter SWEET17 n=1 Tax=Arabidopsis thaliana RepID=SWT17_ARATH	SoyBase	E_val: 1.00E-91	ISS

Proteins Associated with Glyma09g04840

Locus	Gene Symbol	Protein Name
	SWEET28	sucrose transporter gene 28
	SWEET28	sucrose effluxer gene 28

Expression Patterns of Glyma09g04840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g04840 not represented in the dataset	Glyma09g04840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04840

Paralog	Evidence	Comments
Glyma15g16030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g043200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g04840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g04840

Limit To All Plant Sequences

>Glyma09g04840.2   sequence type=transcript   gene model=Glyma09g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACTATGTACCGATATTTTCGTTGTCAAGTCTCAATTCCTGTCCAATATACAACAAAGTGTTTCCCCTCTTTCTCACCCATCTCTCTCTTAGCTTGCTCCATAAATATGCGCTAGAAAGGGAATTTGAAACCACCCCATTTTGGAAAATAACCTTATTTCTTGGTCTGCAAAACATCATGGCAGAAGCGAGTTTCTTTGTTGGAGTCATAGGTAACATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCACGGATCCACCGAAGATTTCTCAAGCCTTCCTTATATTTGCACATTGCTTAATTGCTCCCTCTGGACTTACTATGGAATCATAAAAGCTGGAGAGTACCTTGTGGCCACTGTTAATGGCTTTGGCATTCTCATGGAGACAATCTACATTATTCTATTTCTCATATATGCACCAAAAGGGATAAGGGGTAGGACTGCTATTTTGGCTTTGATTTTGGATGTGGTAATCTTGACGGCAATAATAATTATTACTCAATTAGCATTAGAAGGAGAGACTCGTAGTGGTGCTGTTGGTGTTATGGGAGCAGGCTTAAATATTGTTATGTATTCCTCACCTCTGTCGGTCATGAAAACAGTGGTGACTACAAAAAGCGTGGAGTATATGCCATTCTTGCTTTCTTTTTTCTTCTTTTTCAACGGTGCCGTTTGGTTGTTGTATGCTGTTCTCGTTCGTGATGTTATCCTCGGGGTGGGATCAGGTGACAATTGTTTTGTAAGGACGTGGAATGGCAAGAGAGCGCCGGGGACAGAGAAAGTGAGGGGGCAATGCAAGATTGAATAGAAAGAAGAAAAATCCAGAGAGGTACCCTTCAGCATAGTACCCATTAGATCAAATATGTTCTAGATTTGAGATGGCAACAACAAATAAGAAAAGGCAAAACCTAAAGGATCCAAACTTTTCCTAGTTTTTGTTCGGCTAAACAAAAAAATGGCCCAACCACATTCCACTTGGCTAAACAAGGGCTCTCACAATAGACAAATAACTGCCTGGTTCTCATGTACCTGTTTTGTCTTTTGAAATTTGAGATTATTGGTTAAGTTGAAATAATTTAATGCACTTTTTTTTTTTTTGAGAATTTGATATTACTGCTGAAATAATTTCATATCAGCTGATGTACAAGCTCAGTAATTCTATTTGCCTCTTTAAGT

Coding sequences of Glyma09g04840

Limit To All Plant Sequences

>Glyma09g04840.1   sequence type=CDS   gene model=Glyma09g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGCGAGTTTCTTTGTTGGAGTCATAGGTAACATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCACGGATCCACCGAAGATTTCTCAAGCCTTCCTTATATTTGCACATTGCTTAATTGCTCCCTCTGGACTTACTATGGAATCATAAAAGCTGGAGAGTACCTTGTGGCCACTGTTAATGGCTTTGGCATTCTCATGGAGACAATCTACATTATTCTATTTCTCATATATGCACCAAAAGGGATAAGGGGTAGGACTGCTATTTTGGCTTTGATTTTGGATGTGGTAATCTTGACGGCAATAATAATTATTACTCAATTAGCATTAGAAGGAGAGACTCGTAGTGGTGCTGTTGGTGTTATGGGAGCAGGCTTAAATATTGTTATGTATTCCTCACCTCTGTCGGTCATGAAAACAGTGGTGACTACAAAAAGCGTGGAGTATATGCCATTCTTGCTTTCTTTTTTCTTCTTTTTCAACGGTGCCGTTTGGTTGTTGTATGCTGTTCTCGTTCGTGATGTTATCCTCGGGGTGCCAAACGGTACTGGATTTTTACTGGGAGCGATGCAATTAGTGCTATACGCGATCTACAGAAATGGGAAGCGTGTTTCAAATAACAGATTGGAAGAAGGATTACAACATGAGCCTCTCATCTCAGAGCCGAATAATGAGTCACATCAGAGTGAAGACAGGCCCATCTAG

>Glyma09g04840.2   sequence type=CDS   gene model=Glyma09g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGCGAGTTTCTTTGTTGGAGTCATAGGTAACATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCACGGATCCACCGAAGATTTCTCAAGCCTTCCTTATATTTGCACATTGCTTAATTGCTCCCTCTGGACTTACTATGGAATCATAAAAGCTGGAGAGTACCTTGTGGCCACTGTTAATGGCTTTGGCATTCTCATGGAGACAATCTACATTATTCTATTTCTCATATATGCACCAAAAGGGATAAGGGGTAGGACTGCTATTTTGGCTTTGATTTTGGATGTGGTAATCTTGACGGCAATAATAATTATTACTCAATTAGCATTAGAAGGAGAGACTCGTAGTGGTGCTGTTGGTGTTATGGGAGCAGGCTTAAATATTGTTATGTATTCCTCACCTCTGTCGGTCATGAAAACAGTGGTGACTACAAAAAGCGTGGAGTATATGCCATTCTTGCTTTCTTTTTTCTTCTTTTTCAACGGTGCCGTTTGGTTGTTGTATGCTGTTCTCGTTCGTGATGTTATCCTCGGGGTGGGATCAGGTGACAATTGTTTTGTAAGGACGTGGAATGGCAAGAGAGCGCCGGGGACAGAGAAAGTGAGGGGGCAATGCAAGATTGAATAG

Predicted protein sequences of Glyma09g04840

Limit To All Plant Sequences

>Glyma09g04840.1   sequence type=predicted peptide   gene model=Glyma09g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEASFFVGVIGNIISILMFLSPVPTFWKIKKHGSTEDFSSLPYICTLLNCSLWTYYGIIKAGEYLVATVNGFGILMETIYIILFLIYAPKGIRGRTAILALILDVVILTAIIIITQLALEGETRSGAVGVMGAGLNIVMYSSPLSVMKTVVTTKSVEYMPFLLSFFFFFNGAVWLLYAVLVRDVILGVPNGTGFLLGAMQLVLYAIYRNGKRVSNNRLEEGLQHEPLISEPNNESHQSEDRPI*

>Glyma09g04840.2   sequence type=predicted peptide   gene model=Glyma09g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEASFFVGVIGNIISILMFLSPVPTFWKIKKHGSTEDFSSLPYICTLLNCSLWTYYGIIKAGEYLVATVNGFGILMETIYIILFLIYAPKGIRGRTAILALILDVVILTAIIIITQLALEGETRSGAVGVMGAGLNIVMYSSPLSVMKTVVTTKSVEYMPFLLSFFFFFNGAVWLLYAVLVRDVILGVGSGDNCFVRTWNGKRAPGTEKVRGQCKIE*

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