Glyma09g04540 - SoyBase

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Report for Sequence Feature Glyma09g04540

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3349509
stop:	3353967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g04540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34770	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). \| chr1:12746624-12748449 FORWARD LENGTH=237	SoyBase	E_val: 3.00E-100	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11736	Panther	MELANOMA-ASSOCIATED ANTIGEN (MAGE ANTIGEN)	JGI		ISS
PTHR11736:SF6	Panther	MELANOMA ANTIGEN FAMILY B	JGI		ISS
PF01454	PFAM	MAGE family	JGI		ISS
UniRef100_B9RJL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Melanoma-associated antigen G1, putative n=1 Tax=Ricinus communis RepID=B9RJL0_RICCO	SoyBase	E_val: 7.00E-123	ISS
UniRef100_I1L0V6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0V6_SOYBN	SoyBase	E_val: 5.00E-173	ISS

Expression Patterns of Glyma09g04540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04540

Paralog	Evidence	Comments
Glyma15g15640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g040700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g04540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g04540

Limit To All Plant Sequences

>Glyma09g04540.2   sequence type=transcript   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAACCCTTTTGTGCTCTGTTCGAATCCCTTTGTTGAATACTTCTGTTTGGTGCACTTTGAATCGTAATTAATTATTGTATGTTACTGTCCTTTTCGAATCCATGGTGCTGAAGTGGTTCTATTCTTCTTGATAATTGATATTCTATTATTTGAATTTATGAATTGATTTTCAGAAAATTTCAGTTTGAGATTGCTAGTGGCTCTGAACTTCTGAGTAATATTGATGTGCGAAAACAAAAATGAAAGTTCTATCATCTATGGATTCTATGTTCTACTTACTCTGTGCTTGTGTTTCCAGAATATAGAACATCTCTATTATTTTTGTTTGTTAGTAAGGTTTTACATTGTAAGAACATAACAAGTTCATTTATTATGTATAGAACTTTATGTGTGACTTTCTTTTGTATGAATTATTTCTTTAATTATGACTTATGTCTTGGCAATGGACTAGTGGATTAGCATGATTTGAGTAATTTTTTTAGATTTTCTAAGGTATGGTTTAATTTTTTATGATTTTCTTAAGTATAAAAATTTACTAGTGGATTAGCATGATTTGAGTAATATTTTTTAGTATTGGATTTTAAAAAACAGATTTTTGGTAGCCCATGAAAGTTGAAACACAAAAAGGATCGCAGATCAAACACCATAAAACGTAGTAGCATACGATTCTATGAGGTGAAGTGTGATTCTGAAAACCTTGAACATCGCTCCTCTCCTGCCAGTGTAAGCTAGATTGTTTGATTTTCTAGTCCGTGGAAGACATCCCTAATTTGTTTCGCACCGAGCAAAATACAATTCGAAAGACAAAAAAAAAAAAAAAGGATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAAGAGGAAAAAGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCTGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTCGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGACCCAACCTTCTTCCAAAGCCCGGACACAGTCCTCCCAACAAAGTGTTGCAGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTCATAATTAGTATTGTATATCTTGCCGGTGGTAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAATCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTTGAACTTCTTGTTCAGCAAAGGTATTTACAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACTGTATATTATGAGCTTGCTGAGAGAGCTTTAGATGGACCCATGAATGACAGGATTAAAGAATATATCTCTCAGATTGTGCAGGACAATACTTCAGTGGGTGCTGCCTAAGAGTTGCTAGCTCATCAGTGTCTAAATGGTTCCGATTGATTATTGATTTTAAGCCCGAAAACTCTTCAAGAATCTCAATCTAAATTTTGTCTTCAGCGAATTCTGCTGATTGGATGTTTTGATGTTTTCAAAGATTTAGGTTCAGATTTGCCAAAGTTATGTAAATTTGAATTTGAGTTGTGTATATAGTTACTTAATTAGGTTAAGTCCAATCTTAATTTTATGTATGTTAGAAAGTAACTAATTGTTACTTTTTTGTTTAGATGCTTGGAAATTAATGCAGATGACAAACCAAATGAACCTAATCGAGTTTCATTTTGAGTTTGAATTGGTCACAAA

>Glyma09g04540.3   sequence type=transcript   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACCGGACTGGAAAAAAAGGAAATACTAAAACATTTAAAATAACGTTGGATCAGTCTCGAAGAAAACCATCAGAAACGCAGTGAATCTCCAGAAATCATTTTCTCTACCTCTGAAAAAGATTTTTGGTAGCCCATGAAAGTTGAAACACAAAAAGGATCGCAGATCAAACACCATAAAACGTAGTAGCATACGATTCTATGAGGTGAAGTGTGATTCTGAAAACCTTGAACATCGCTCCTCTCCTGCCAGTGTAAGCTAGATTGTTTGATTTTCTAGTCCGTGGAAGACATCCCTAATTTGTTTCGCACCGAGCAAAATACAATTCGAAAGACAAAAAAAAAAAAAAAGGATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAAGAGGAAAAAGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCTGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTCGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGACCCAACCTTCTTCCAAAGCCCGGACACAGTCCTCCCAACAAAGTGTTGCAGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTCATAATTAGTATTGTATATCTTGCCGGTGGTAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAATCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTTGAACTTCTTGTTCAGCAAAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACTGTATATTATGAGCTTGCTGAGAGAGCTTTAGATGGACCCATGAATGACAGGATTAAAGAATATATCTCTCAGATTGTGCAGGACAATACTTCAGTGGGTGCTGCCTAAGAGTTGCTAGCTCATCAGTGTCTAAATGGTTCCGATTGATTATTGATTTTAAGCCCGAAAACTCTTCAAGAATCTCAATCTAAATTTTGTCTTCAGCGAATTCTGCTGATTGGATGTTTTGATGTTTTCAAAGATTTAGGTTCAGATTTGCCAAAGTTATGTAAATTTGAATTTGAGTTGTGTATATAGTTACTTAATTAGGTTAAGTCCAATCTTAATTTTATGTATGTTAGAAAGTAACTAATTGTTACTTTTTTGTTTAGATGCTTGGAAATTAATGCAGATGACAAACCAAATGAACCTAATCGAGTTTCATTTTGAGTTTGAATTGGTCACAAA

Coding sequences of Glyma09g04540

Limit To All Plant Sequences

>Glyma09g04540.1   sequence type=CDS   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAAGAGGAAAAAGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCTGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTCGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGACCCAACCTTCTTCCAAAGCCCGGACACAGTCCTCCCAACAAAGTGTTGCAGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTCATAATTAGTATTGTATATCTTGCCGGTGGTAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAATCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTTGAACTTCTTGTTCAGCAAAGGTATTTACAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACTGTATATTATGAGCTTGCTGAGAGAGCTTTAGATGGACCCATGAATGACAGGATTAAAGAATATATCTCTCAGATTGTGCAGGACAATACTTCAGTGGGTGCTGCCTAA

>Glyma09g04540.2   sequence type=CDS   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAAGAGGAAAAAGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCTGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTCGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGACCCAACCTTCTTCCAAAGCCCGGACACAGTCCTCCCAACAAAGTGTTGCAGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTCATAATTAGTATTGTATATCTTGCCGGTGGTAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAATCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTTGAACTTCTTGTTCAGCAAAGGTATTTACAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACTGTATATTATGAGCTTGCTGAGAGAGCTTTAGATGGACCCATGAATGACAGGATTAAAGAATATATCTCTCAGATTGTGCAGGACAATACTTCAGTGGGTGCTGCCTAA

>Glyma09g04540.3   sequence type=CDS   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAAGAGGAAAAAGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCTGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTCGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGACCCAACCTTCTTCCAAAGCCCGGACACAGTCCTCCCAACAAAGTGTTGCAGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTCATAATTAGTATTGTATATCTTGCCGGTGGTAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAATCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTTGAACTTCTTGTTCAGCAAAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACTGTATATTATGAGCTTGCTGAGAGAGCTTTAG

Predicted protein sequences of Glyma09g04540

Limit To All Plant Sequences

>Glyma09g04540.1   sequence type=predicted peptide   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAAEDFSQFGISKEEKDKLVGELIRYMLFKTHQNSGCPIKREELTQLVTKNYHQRNLPTFVINEAKEKLSFVFGYEMRELQRTQPSSKARTQSSQQSVADSKSYILISQLPPNVYEKYVVDVNTAHLSGFTFVIISIVYLAGGKIPEENLWSQMRRMGLGETESSHPVLGNVKQAFELLVQQRYLQKDKVNGPEGNTVYYELAERALDGPMNDRIKEYISQIVQDNTSVGAA*

>Glyma09g04540.2   sequence type=predicted peptide   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAAEDFSQFGISKEEKDKLVGELIRYMLFKTHQNSGCPIKREELTQLVTKNYHQRNLPTFVINEAKEKLSFVFGYEMRELQRTQPSSKARTQSSQQSVADSKSYILISQLPPNVYEKYVVDVNTAHLSGFTFVIISIVYLAGGKIPEENLWSQMRRMGLGETESSHPVLGNVKQAFELLVQQRYLQKDKVNGPEGNTVYYELAERALDGPMNDRIKEYISQIVQDNTSVGAA*

>Glyma09g04540.3   sequence type=predicted peptide   gene model=Glyma09g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAAEDFSQFGISKEEKDKLVGELIRYMLFKTHQNSGCPIKREELTQLVTKNYHQRNLPTFVINEAKEKLSFVFGYEMRELQRTQPSSKARTQSSQQSVADSKSYILISQLPPNVYEKYVVDVNTAHLSGFTFVIISIVYLAGGKIPEENLWSQMRRMGLGETESSHPVLGNVKQAFELLVQQRKTKLMVLKAILYIMSLLREL*

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