Glyma09g04500 - SoyBase

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Report for Sequence Feature Glyma09g04500

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3316706
stop:	3319908
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g04500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49220	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF789) \| chr5:19956627-19958453 FORWARD LENGTH=409	SoyBase	E_val: 2.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05623	PFAM	Protein of unknown function (DUF789)	JGI		ISS
UniRef100_Q9FJ18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF31026.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FJ18_ARATH	SoyBase	E_val: 1.00E-87	ISS
UniRef100_UPI000233C8F1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C8F1 related cluster n=1 Tax=unknown RepID=UPI000233C8F1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g04500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04500

Paralog	Evidence	Comments
Glyma15g15580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g040300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g04500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g04500

Limit To All Plant Sequences

>Glyma09g04500.2   sequence type=CDS   gene model=Glyma09g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGTCTCCGGTGGCGCCGTCGTCGCCGGCGGGAATGTGAGGAGGAACCACCGTTACCTCGGCGAGAACCGTTTCTACTACTACCCACCACCGTTGCGGAAATACAGAGAAGAACAGGATCATGAGAAGGAGCAGAAATCAACGTTGTCGGAGAACAGACCCGGTTCCTCTTCGGATTGCTCTTTTTCTTCGAGTGGAACAACGTGTGATGTCTCCAACTTGCGTCGGTTCTTGGAGCACACCACACCACATGTTCCCGCCCAATATTTTCAGAGAATTAAGAGATGGAAAACGATGGAGGGAGAGTTGCATGCGTACTTTGTGCTTGGGGACTTATGGGAATCTTTCAAGGAATGGAGTGCATATGGGGCCGGTGTTCCGTTGGTGTTGGATGGAAGTGAATGCGTCACACAGTATTACAATGTCTCCTTGTCTGCCATTCAGCTTTATGTTCATCCATCAAAACCTTCCCCACGGTTAAGGAGACCCAGTCAGAGAGACTCTGAATCTGCTACAGAGACAAGCAGTGACAGCAGCAGTGGCTATTGTCATGAAAAAGGGGCAAAGAGTGTGCATGGCACTTGGAACCAGGATAACTCGTCAGATGCAAGATATCAATGTTCAAAAAGAGTTTCACTAAGTAAACCTTTAACAAGTTCATCAAGTGATGAGAATGAGAGCTGCAACCCACCCAGTCAGCTTATATTCGAATACTTTGAGCATGAAAATCCTTATAATCGCGAGCCTTTAGCAGATAAGATTTCCGACCTTACACGTCAATTTCCCGAGTTGAAGACATACCGGAGCTGCGATCTTTCCTCAGCAAGTTGGGTTTCTTTGGCTTGGTATCCAATATACAGAATACCCACTGGTCCAACACTAGAGAGCATGAGTGCCTGCTTCCTGACTTTCCATTCCCTATCAACAGCAGCTTTGCAAAGTTTAAGTAATGATGGATTCCATCTTTGTTCAAGAGGTATGAACTTGTCATCCAAGCTATCATTACCAATATTTGGGCTTGCCTTTCACAAGTTGAAAGCTTCTGTCTGGGATCCTGATGAGGTTTCTGAAGGTCAGAAAGCCAATTCTTTGTTGCGAGCCGCTGATAACTGGATTAGGCTATTGCAAGTTAACCATCCTGATTACAATTACTTCATGTCACATTATCCATATTGGAGATGA

Predicted protein sequences of Glyma09g04500

Limit To All Plant Sequences

>Glyma09g04500.2   sequence type=predicted peptide   gene model=Glyma09g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSGGAVVAGGNVRRNHRYLGENRFYYYPPPLRKYREEQDHEKEQKSTLSENRPGSSSDCSFSSSGTTCDVSNLRRFLEHTTPHVPAQYFQRIKRWKTMEGELHAYFVLGDLWESFKEWSAYGAGVPLVLDGSECVTQYYNVSLSAIQLYVHPSKPSPRLRRPSQRDSESATETSSDSSSGYCHEKGAKSVHGTWNQDNSSDARYQCSKRVSLSKPLTSSSSDENESCNPPSQLIFEYFEHENPYNREPLADKISDLTRQFPELKTYRSCDLSSASWVSLAWYPIYRIPTGPTLESMSACFLTFHSLSTAALQSLSNDGFHLCSRGMNLSSKLSLPIFGLAFHKLKASVWDPDEVSEGQKANSLLRAADNWIRLLQVNHPDYNYFMSHYPYWR*

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