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Report for Sequence Feature Glyma09g04490

Feature Type:gene_model
Chromosome:Gm09
Start:3312794
stop:3315740
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g04490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49230AT Annotation by Michelle Graham. TAIR10: Drought-responsive family protein | chr5:19959048-19960422 REVERSE LENGTH=211 SoyBaseE_val: 8.00E-72ISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009785GO-bp Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway SoyBaseN/AISS
GO:0010161GO-bp Annotation by Michelle Graham. GO Biological Process: red light signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF05605PFAM Drought induced 19 protein (Di19) JGI ISS
UniRef100_C6SY55UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SY55_SOYBN SoyBaseE_val: 2.00E-156ISS
UniRef100_G7IMY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein DEHYDRATION-INDUCED-like protein n=1 Tax=Medicago truncatula RepID=G7IMY1_MEDTR SoyBaseE_val: 3.00E-83ISS

Expression Patterns of Glyma09g04490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04490
ParalogEvidenceComments
Glyma15g15560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g040200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g04490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g04490
>Glyma09g04490.1   sequence type=CDS   gene model=Glyma09g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCGATTCTTGGATTTCCACGCGCATGTCGTCCTCTTCACGCCGCTATCATTCGCGATCTGATCTGTACGTGGAGGAGAGTGAAGGGAGCGATGATTTCAGGGCGGAGTTTCTGTGCCCTTTCTGCGCCGAGGATTACGACGTCGTTTCCCTCTGTTGCCACATTGACGACCACCACCCTATCCAAGCCAAAAACGGGGTGTGTCCCATTTGTGGGAAGAAGGTGGGATTGGATCTCGTTGGACATATTACTACGCAACATGGGAACTTCTTGAGGGTGCAGCGTAAAAGGAGGGTCAGGAAAGTAGGCTCTGGTTCAACAATGTCTATATTGAGAAAAGAGTTACGAGAAGGAGCCTTGCACTCCCTTCTTGGAGGTTCTTCATACTTAGCTTCCTGCAATTCTGAGCCTGATCCTCTGTTATCATCTTTTATGTTTAACCCAGCTGTAACTGATGATTCTGCGAGTGCAAAACCTCCTTCTGTTGAAGATGCTCTAGTAAAAGAAAGTTCAAAAGACGATTTCTTGGAAAGAAAACCTCAACAGTTACAGCTGTCAGAAGAAGATCAAGTAGAGAAGGCTCGGAGGTTTGAATTCGTGCAAGGACTTCTGATGTCCACCATTCTTGATGATATGTTATGA
Predicted protein sequences of Glyma09g04490
>Glyma09g04490.1   sequence type=predicted peptide   gene model=Glyma09g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSDSWISTRMSSSSRRYHSRSDLYVEESEGSDDFRAEFLCPFCAEDYDVVSLCCHIDDHHPIQAKNGVCPICGKKVGLDLVGHITTQHGNFLRVQRKRRVRKVGSGSTMSILRKELREGALHSLLGGSSYLASCNSEPDPLLSSFMFNPAVTDDSASAKPPSVEDALVKESSKDDFLERKPQQLQLSEEDQVEKARRFEFVQGLLMSTILDDML*






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