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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16120 | AT | Annotation by Michelle Graham. TAIR10: COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04833 | PFAM | COBRA-like protein | JGI | ISS | |
| UniRef100_G7IMX1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: COBRA-like protein n=1 Tax=Medicago truncatula RepID=G7IMX1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L0U8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L0U8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g04460 not represented in the dataset |
Glyma09g04460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g039900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g04460.1 sequence type=CDS gene model=Glyma09g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTGCATGTCCACAGCTTCTTCTATTTTTGGTTCGTCGTCATGATCTTCGTCGTCGTATTTTTCACGGCACCGTCGGTGTCTCAGCCGCAAGCCACCGGGTCCTGCAACGGGATACTCCTGTCGTACGCGTATACCGGCGGCTTGCAGCTGCCTCCGAATGTCTCGGACCCGGCGGAGCAGCCGTACCGGTTCTCCTCGACATTGACGGTGCTGAACAACGGGCTGGAGGAGCTGAGGTCGTGGAGGGTGTTCGTGGGGTTTCAGCACGGCGAGTGGCTGGTGTCCGCCTCGAACGCGGTGCTCGCCGACGGCACGAGCCTCCCCGGTTCGGTGGAAAACGGCACCGTTTTGAGTGGTGAAACCGTGAGGGATCTGAAGACTGCGGTGGCGACCGCCGGGGACTTGAATCAGATGCAGGTGAGGGTAGACATGGTGGGGACCTTGCTTGGAGTGGCGCCACCCTCTGTGCCAATGCCTTCTTCTGTTACCTTGGCTAACGATGGATTCTTGTGTGGTCAACCCTCTGGTCAAGGGAGCAATGAAACTCATGTGTGTTGCACAAGCGACCCCAATTTCAAAACAAACATAACCACAGAAGAAGAGTTCCTACCCAGGCAAAAGGGTGACCTTAGCATCACATACGACATCATCAGAACCTATGACTCCGATTACTGGGCAGAGGTCACAATTGCAAACCACAACCCCTTAGGTCGTCTTGATAACTGGAGACTAAGCTGGGACTGGAACAACAACGAGTTCATCCACACAATCAAAGGTGCATATCCCTTAAACGTGGATTCCTCTGACTGTGTCTTCGGTCCACAAGGCCTGTTCTACAAGGAACTCGACTTCTCCAACGTGTTAAACTGCGAAAGAAGACCAACCATAGTTGATCTTCCTCCCACAATGTTCAACAACACAGACTTCGGTAAAATCCCGTTTTGTTGTAGGAATGGTACTATCTTGCCACCGACAATGGACCCTAGTTTGTCATCTTCAAGGTTCCAAATTCAGGTTTTCAAAATGCCACCGAACCTTAACCGTTCCAAGCTTTCACCACCTCATAATTGGGAGATAAAGGGTACCCTTAACCCTGATTATGCATGTGGGAACCCTATTAGGGTTAGTCCTAGTGAATCTCCTGATCCAACACACCCACCATCGAACAAATCCGCGATTGCAAGCTGGCAAGTGGTTTGTAACATCACAAACACAAAACGAGAAGCACGTAAATGCTGTGTTTCTTTCTCAGCTTATTACAATGAATCGGTTGTTCCATGCAACACGTGTGCATGTGGATGTAGTAACCCTGAGAGAACGTGTAGTGCAACCTCACAAGCAATGTTGCTTCCACCAGAGGCACTTCTTGTACCTTTCCAGAACAGAACCGAGAAGGCACGTGCTTGGGCTGAGATACAACACTTGAATGTCCCTAACCCTTTTCCTTGTGGTGATAACTGTGGTGTGAGCATAAACTGGCACTTGGTGACGGATCACCGGAGCGGTTGGAGTGCAAGGATCACACTCTTCAACTGGGGTGAAGCCAGTTTTGCTGATTGGTTCGCCGCGGTGCGAATGGAGAAGGCTGCAAAGGGGTTTGAGGAGGTGTATTCTTTTAATGGAAGCCTTTTGGATGGTGTGGATGGCACGATATTCATGCAAGGGAAGAAAGGGTTGAACTTTCTTGTGGCGGAGACGGATGGATCTAACCCTCGGAGAGATCCCAGGGTGCCCGGGAAACAGCAATCGGTGATCTCTTTTACAAAGAAGAATACTCCTGGAATCGATGTGGTTGGTGGTGATGGTTTTCCTAGTAAGGTTTTCTTCAATGGGGAGGAATGTTCTCTTCCTTCAGTGGTTCCAAGCAGTGGTACTAGAATGGAGGTTTCATTGGCTACTATGATGTTCTTGGTTCTGTTTTTGTGGATTCTCTTCATGCGGCAATAG
>Glyma09g04460.1 sequence type=predicted peptide gene model=Glyma09g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALHVHSFFYFWFVVMIFVVVFFTAPSVSQPQATGSCNGILLSYAYTGGLQLPPNVSDPAEQPYRFSSTLTVLNNGLEELRSWRVFVGFQHGEWLVSASNAVLADGTSLPGSVENGTVLSGETVRDLKTAVATAGDLNQMQVRVDMVGTLLGVAPPSVPMPSSVTLANDGFLCGQPSGQGSNETHVCCTSDPNFKTNITTEEEFLPRQKGDLSITYDIIRTYDSDYWAEVTIANHNPLGRLDNWRLSWDWNNNEFIHTIKGAYPLNVDSSDCVFGPQGLFYKELDFSNVLNCERRPTIVDLPPTMFNNTDFGKIPFCCRNGTILPPTMDPSLSSSRFQIQVFKMPPNLNRSKLSPPHNWEIKGTLNPDYACGNPIRVSPSESPDPTHPPSNKSAIASWQVVCNITNTKREARKCCVSFSAYYNESVVPCNTCACGCSNPERTCSATSQAMLLPPEALLVPFQNRTEKARAWAEIQHLNVPNPFPCGDNCGVSINWHLVTDHRSGWSARITLFNWGEASFADWFAAVRMEKAAKGFEEVYSFNGSLLDGVDGTIFMQGKKGLNFLVAETDGSNPRRDPRVPGKQQSVISFTKKNTPGIDVVGGDGFPSKVFFNGEECSLPSVVPSSGTRMEVSLATMMFLVLFLWILFMRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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