Glyma09g04430 - SoyBase

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Report for Sequence Feature Glyma09g04430

Feature Type:	gene_model
Chromosome:	Gm09
Start:	3270311
stop:	3275541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g04430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16143	AT	Annotation by Michelle Graham. TAIR10: importin alpha isoform 2 \| chr4:9134450-9137134 REVERSE LENGTH=535	SoyBase	E_val: 0	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG0166	KOG	Karyopherin (importin) alpha	JGI		ISS
PTHR23316	Panther	IMPORTIN ALPHA-RELATED	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
PF01749	PFAM	Importin beta binding domain	JGI		ISS
UniRef100_I1L0U6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Importin subunit alpha n=1 Tax=Glycine max RepID=I1L0U6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L0U6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha n=1 Tax=Glycine max RepID=I1L0U6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g04430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04430

Paralog	Evidence	Comments
Glyma15g15480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g039600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g04430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g04430

Limit To All Plant Sequences

>Glyma09g04430.1   sequence type=CDS   gene model=Glyma09g04430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCTGAGGCCGAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGACGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGCAAGAGCAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGCGAAGGCCTCCAAGCTCAGCAGCAGTTCCCCACTCCTCTCCAAGCCGCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCTGCGATGGTTGCTGGAGTGTGGTCCGATGATAACAGCCAGCAACTGGAAGCGACCACGCAGTTTCGGAAACTGCTTTCGATTGAGCGCAGTCCTCCAATTGAGGAAGTTATTCAAGCTGGGGTTGTGCCTCGATTTGTGGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCGATATTTGTCAAGCTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCATTGGGGAATGTTGCTGGTGACTCTCCTAAGTGTCGTGATCTTGTTCTCAGCCATGGTGCCCTGATCCCACTGTTGGCCCAGTTGAATGAACATGCAAAACTTTCAATGTTGAGAAACGCGACATGGACCCTGTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGGTGAGGGCAGCGCTTCCTGCTCTAGAACGATTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGACGCATGTTGGGCACTATCATATCTTTCCGATGGAACAAATGACAAAATCCAAGCCGTTATTGAGGCTGGTGTGTGTCCCAGACTGGTGCAGCTCCTTCTGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACAGGAGATGATATGCAGACTCAGACTATCATCAATCATGGTGCGCTCCCATGCCTCTTGAGCCTGTTGACACATAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACCATTTCAAACATTACAGCTGGAAACAGAGATCAGATACAGGCTGTTGTTGAAGCTGGTTTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTACCCATGAGCAGATCAAGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCATGGGTAACAGTGGAGATGTCAACTTGTATGCACAGATGATAGACGAAGCAGAGGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGACGATGATGAGACACTACCTACAGGCGATGGTGCTCAACCTGGTTTTAATTTTGGAAACAATGATGTTCCAGTTCCATCTGGTGGATTCAACTTTAGTTGA

Predicted protein sequences of Glyma09g04430

Limit To All Plant Sequences

>Glyma09g04430.1   sequence type=predicted peptide   gene model=Glyma09g04430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNFS*

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