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Report for Sequence Feature Glyma09g04394

Feature Type:gene_model
Chromosome:Gm09
Start:3255101
stop:3259680
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10240AT Annotation by Michelle Graham. TAIR10: FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680 SoyBaseE_val: 0ISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF03101PFAM FAR1 DNA-binding domain JGI ISS
PF04434PFAM SWIM zinc finger JGI ISS
PF10551PFAM MULE transposase domain JGI ISS
UniRef100_Q9SY66UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 11 n=1 Tax=Arabidopsis thaliana RepID=FRS11_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233C8EFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C8EF related cluster n=1 Tax=unknown RepID=UPI000233C8EF SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g04394 not represented in the dataset

Glyma09g04394 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g15450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g039300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g04394.2   sequence type=transcript   gene model=Glyma09g04394   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGAATTTAAATTTTGGAATTTGGCAGTGTTTTTGGGTGACCCCATGAGAGAATCTTTGACATTGGAGAATAATAGTTGTTGTGTGCTGGGAAGTGGAAGTACAGTTTAAACATCTGCAAACGAATTAGGTTGTTGTTACTGACGACAGAATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCACAGGATGACATTGGCACCATTGAGGAAATACCAGAGGAAACAATTCTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGCCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCAATTAGACGGCACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTCACGAGGAGGGATTTTACTTGCCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAATCGCAAATCGTCTCGCTGTGGTTGTCAAGCATACATGCGTATCGTCAAAAGATCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCACAATCACGAGTTGTTAAAATCCAATGAGGTGCATCTTCTTCCAGCATATTGTCCTATATCTCCTGATGACAAGGGTCGGATATGTATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTTAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGTCCTACAGTTCATCTATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGAGTAGAAGCTTATGACATGGTGTTGGGAATTTGGCTCGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATATTGACAGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACTAAGCATGGCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTATTTCTTGGGTCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTATACAATTTGGAACTGGTGGAAGATTTTGAAGAGGGTTGGAGGCAAATGGTTGATCAATATGGACTCCATGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCATTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAATCCATTAATGCTTTCATCCAACAGTTCTTGAGTGCCCAGTCTCAATTAGATCGCTTTGTGGAGCAAGTGGTTGAAATAGTGGATTTTAATGACCGAGCTGGAGCGAAGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGCACTTACTCCTTATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATCAGCTGCAGTTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACACGTGCTACGTGTCATGTCAACTAACAACTGTTTTCACATCCCGGATCAATATTTACCAGCCCGTTGGCGAGGCAACAATTCATCTTCTGTTAACCACTACCGGGGTACAACCAGTAGGGATCAGCCTGAAAGGATACAGTTTTTAGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATTGAAACTGAGGAACGCCTGGATGTTGCTTGTGATCAAATTTCTATGGTGCTATCACGCATCAAAACCTTTCCTAGGTCCCCACACGGGGTGAATGACATTGCATATAGTTATCCATCAGATTCATTAATCCTGCCAGAGGTAGAAGATACTGATGGAATGATTCCCGGCTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTAAAGGAGAGAAGAGCGAGAGATGTAGTGGATCTCACTAGGAAACGCAGGCAGTTCTCCATGCCATTGTGTGCTCAATATGGACATGATGCGTCTGATTGCTCAATAATGGCGAGTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAGAGTGAGTGGAAGTAGTACTGCTGTACAAAGTAAATGCATTTTTTCTTGGGGGTACATAAATGCTTTTTTATTTGTTTCAGATGCATGTTGTAATACACATCTTTTATATTTTCTTCACTCCTTTCCTCCAATTTAGTGATACACATGTTGCTTCTCACTCTTTACATCCGCAGAGGTTTTAGTCCTATTTGCACCACTTATATTAGCATTGAGAAGTTTGATTTACTTAAATATATAAACATTTTTCGTGTACTTTTTGTGCCTGTGTAGTAAGAATCATTGTCTTTTGGAGCTTCTGCCTACAATCATATGCCCGTTGCGGCATTTTAGATTCCAGTTTGTACATTGAAAGTCGTAGTTGAAAATAAAATGCTTGTATGCGTATTCGTAAAAGATTTATTTGGCTCCATGATATTTGTGAGTTCATAA

>Glyma09g04394.1   sequence type=CDS   gene model=Glyma09g04394   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCACAGGATGACATTGGCACCATTGAGGAAATACCAGAGGAAACAATTCTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGCCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCAATTAGACGGCACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTCACGAGGAGGGATTTTACTTGCCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAATCGCAAATCGTCTCGCTGTGGTTGTCAAGCATACATGCGTATCGTCAAAAGATCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCACAATCACGAGTTGTTAAAATCCAATGAGGTGCATCTTCTTCCAGCATATTGTCCTATATCTCCTGATGACAAGGGTCGGATATGTATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTTAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGTCCTACAGTTCATCTATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGAGTAGAAGCTTATGACATGGTGTTGGGAATTTGGCTCGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATATTGACAGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACTAAGCATGGCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTATTTCTTGGGTCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTATACAATTTGGAACTGGTGGAAGATTTTGAAGAGGGTTGGAGGCAAATGGTTGATCAATATGGACTCCATGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCATTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAATCCATTAATGCTTTCATCCAACAGTTCTTGAGTGCCCAGTCTCAATTAGATCGCTTTGTGGAGCAAGTGGTTGAAATAGTGGATTTTAATGACCGAGCTGGAGCGAAGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGCACTTACTCCTTATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATCAGCTGCAGTTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACACGTGCTACGTGTCATGTCAACTAACAACTGTTTTCACATCCCGGATCAATATTTACCAGCCCGTTGGCGAGGCAACAATTCATCTTCTGTTAACCACTACCGGGGTACAACCAGTAGGGATCAGCCTGAAAGGATACAGTTTTTAGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATTGAAACTGAGGAACGCCTGGATGTTGCTTGTGATCAAATTTCTATGGTGCTATCACGCATCAAAACCTTTCCTAGGTCCCCACACGGGGTGAATGACATTGCATATAGTTATCCATCAGATTCATTAATCCTGCCAGAGGTAGAAGATACTGATGGAATGATTCCCGGCTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTAAAGGAGAGAAGAGCGAGAGATGTAGTGGATCTCACTAGGAAACGCAGGCAGTTCTCCATGCCATTGTGTGCTCAATATGGACATGATGCGTCTGATTGCTCAATAATGGCGAGTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAG

>Glyma09g04394.2   sequence type=CDS   gene model=Glyma09g04394   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCACAGGATGACATTGGCACCATTGAGGAAATACCAGAGGAAACAATTCTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGCCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCAATTAGACGGCACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTCACGAGGAGGGATTTTACTTGCCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAATCGCAAATCGTCTCGCTGTGGTTGTCAAGCATACATGCGTATCGTCAAAAGATCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCACAATCACGAGTTGTTAAAATCCAATGAGGTGCATCTTCTTCCAGCATATTGTCCTATATCTCCTGATGACAAGGGTCGGATATGTATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTTAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGTCCTACAGTTCATCTATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGAGTAGAAGCTTATGACATGGTGTTGGGAATTTGGCTCGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATATTGACAGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACTAAGCATGGCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTATTTCTTGGGTCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTATACAATTTGGAACTGGTGGAAGATTTTGAAGAGGGTTGGAGGCAAATGGTTGATCAATATGGACTCCATGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCATTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAATCCATTAATGCTTTCATCCAACAGTTCTTGAGTGCCCAGTCTCAATTAGATCGCTTTGTGGAGCAAGTGGTTGAAATAGTGGATTTTAATGACCGAGCTGGAGCGAAGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGCACTTACTCCTTATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATCAGCTGCAGTTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACACGTGCTACGTGTCATGTCAACTAACAACTGTTTTCACATCCCGGATCAATATTTACCAGCCCGTTGGCGAGGCAACAATTCATCTTCTGTTAACCACTACCGGGGTACAACCAGTAGGGATCAGCCTGAAAGGATACAGTTTTTAGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATTGAAACTGAGGAACGCCTGGATGTTGCTTGTGATCAAATTTCTATGGTGCTATCACGCATCAAAACCTTTCCTAGGTCCCCACACGGGGTGAATGACATTGCATATAGTTATCCATCAGATTCATTAATCCTGCCAGAGGTAGAAGATACTGATGGAATGATTCCCGGCTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTAAAGGAGAGAAGAGCGAGAGATGTAGTGGATCTCACTAGGAAACGCAGGCAGTTCTCCATGCCATTGTGTGCTCAATATGGACATGATGCGTCTGATTGCTCAATAATGGCGAGTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAG

>Glyma09g04394.1   sequence type=predicted peptide   gene model=Glyma09g04394   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGTSLVLESSENGTDLSQDDIGTIEEIPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVHLLPAYCPISPDDKGRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVEAYDMVLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVELPETKHGFCIWHILSKFSDWFSLFLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDQYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINAFIQQFLSAQSQLDRFVEQVVEIVDFNDRAGAKQKMQRKLQKVCLKTGSPIESHAATALTPYALSKLQEELVLAPQYASFLVDEGCFQVRHHSQSDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPARWRGNNSSSVNHYRGTTSRDQPERIQFLESMVSTFLVESIETEERLDVACDQISMVLSRIKTFPRSPHGVNDIAYSYPSDSLILPEVEDTDGMIPGFTITNPHDSITTGKLKERRARDVVDLTRKRRQFSMPLCAQYGHDASDCSIMASDNMSGDALGYL*

>Glyma09g04394.2   sequence type=predicted peptide   gene model=Glyma09g04394   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGTSLVLESSENGTDLSQDDIGTIEEIPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVHLLPAYCPISPDDKGRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVEAYDMVLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVELPETKHGFCIWHILSKFSDWFSLFLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDQYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINAFIQQFLSAQSQLDRFVEQVVEIVDFNDRAGAKQKMQRKLQKVCLKTGSPIESHAATALTPYALSKLQEELVLAPQYASFLVDEGCFQVRHHSQSDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPARWRGNNSSSVNHYRGTTSRDQPERIQFLESMVSTFLVESIETEERLDVACDQISMVLSRIKTFPRSPHGVNDIAYSYPSDSLILPEVEDTDGMIPGFTITNPHDSITTGKLKERRARDVVDLTRKRRQFSMPLCAQYGHDASDCSIMASDNMSGDALGYL*







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