SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49360 | AT | Annotation by Michelle Graham. TAIR10: beta-xylosidase 1 | chr5:20012179-20016659 REVERSE LENGTH=774 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0010214 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed coat development | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0046556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity | SoyBase | N/A | ISS |
| PF00933 | PFAM | Glycosyl hydrolase family 3 N terminal domain | JGI | ISS | |
| PF01915 | PFAM | Glycosyl hydrolase family 3 C terminal domain | JGI | ISS | |
| UniRef100_G7IMV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta xylosidase n=1 Tax=Medicago truncatula RepID=G7IMV1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L0T5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0T5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g04337 not represented in the dataset |
Glyma09g04337 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g15370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g038600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g04337.2 sequence type=transcript gene model=Glyma09g04337 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGTTTCTGTGCCCCCCAAAAACCCATTGAAAGACGCAACTCCCCCTCTATAAATAACCCACCCCACTCACCATCACTCTTCATTCCAAACCCACATTTTAAAATTTTGATCATCATGGCCTGTGAAAATGACAAAAAAGGCCACCTATTACTTGCCCTAGGGCTAGTGCTCTGCGTCACCCTGACCTTCTTCCCAAGGGTGACCGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGGCTCACGAGGGGGTTCAAGTTCTGCAACACGCACGTGCCGATCCACGTGAGGGTGCAGGACCTCATAGCGAGGCTCACATTGCCGGAAAAAATTAGGCTCGTCGTTAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGATACGAGTGGTGGTCGGAGGCGCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCTCAAGTCATCTCAACCGCTGCTTCGTTTAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCGACATTGGCCGCAAAATACGCCGCCAGCTATGTCAAAGGACTCCAAGGCGATGGTGCCGGAAATCGCCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAATTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGACACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCAAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATTCGTGGCCAATGGGGCCTCAATGGGTATATTGTTTCGGACTGTGACTCGGTTGGAGTTTTCTTTGACAATCAACACTACACAAGAACACCTGAGGAGGCAGCTGCTGAGGCCATCAAAGCTGGCCTGGACTTGGATTGTGGCCCATTCTTGGCTATCCACACTGATTCTGCCATTAGGAAGGGACTCATTTCAGAAAATGATCTTAACCTTGCATTGGCCAACCTTATTACAGTCCAAATGAGATTGGGTATGTTCGACGGTGAACCATCAACCCAACCATTCGGAAACTTGGGCCCAAGAGATGTTTGCACCCCAGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTGCTACAAAATAAAGGAAACTCCCTACCACTATCCCCTTCAAGACTTCGTATCGTAGGAGTCATTGGACCCAATACGGATGCTACCGTTACAATGATCGGAAACTATGCTGGTGTGGCATGTGGTTATACCACCCCTTTGCAAGGAATTGCGAGGTATGTAAAGACGGCTCATCAAGTAGGTTGTAGGGGTGTCGCTTGCAGGGGAAATGAACTATTTGGTGCCGCAGAGATCATAGCTAGGCAAGTTGATGCGACTGTTCTAGTAATGGGCCTTGACCAAACCATAGAAGCGGAAACAAGAGATAGGGTTGGGCTTCTCTTACCAGGCCTTCAACAAGAACTTGTGACTAGGGTGGCCAGGGCCGCTAAGGGCCCCGTTATCTTGGTCATCATGTCTGGTGGCCCGGTTGATGTTTCGTTTGCTAAAAATAACCCTAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGCCAAGCTGGGGGAACTGCCATTGCTGATGTGATCTTTGGTGCAACCAACCCAGGTAAATTGTTCTCACACCATTATCTTGAATTCATTTCATATACAATATAAAATGTTTTACACAAATACTAAATAAGAATTTGTGTAAACAGTGTACGACGCATAATTAATCTAAAATATCATGCAATCATAATTAAAATTTTACACATACTACATATAGAAATTAAGCTCTAAAATTTTATCTTATCAACATATCATATTAATTAATAGAATGATATAACAAGAAAAAATAAAAATAGGCAATCCACTCACGTAATTATATCATCATTTAATCATAAATAATCATTTTATGATTTTTCAATAACTACATGAAAAGTCATATCAATAACAATTTCTGATCGATTAAAAAATTGTTTTCTTATGTTAGTACTTGATGATTAAACTCATATACTAATAATAAAGTCTTATTGCATATTTTTATATATAAAATATTTTACTCTATGAAAGAAATTAAAGTATGAATAATGGAGACATGCTCCCTATGACTTAATGAGTTATTTTTGGATTGGGCTTGTTTTGCAGGAGGAAGGTTACCCATGACATGGTACCCACAAGGGTATTTGGCTAAAGTGCCGATGACAAACATGGACATGCGTCCAAACCCAGCAACAGGATACCCAGGAAGAACCTACAGATTCTACAAAGGACCAGTGGTGTTCCCATTTGGACATGGACTAAGTTACTCAAGATTCAGCCAAAGCTTAGCACTTGCTCCAAAACAGGTCTCGGTGCAAATACTGAGCCTCCAAGCCTTGACAAACTCAACCCTCTCAAGCAAAGCAGTGAAGGTGAGCCATGCCAATTGTGACGACTCATTGGAGACGGAATTCCACGTTGACGTGAAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCATATTCTCGAAACCACCCCCGGGAAAATGGTCACAAATTAAACAGTTGGTGACCTTCCACAAGACCCATGTTCCTGCTGGCTCCAAGCAACGACTTAAGGTTAATGTTCATTCCTGCAAACACTTGTCCGTTGTGGACCAGTTTGGGGTTCGAAGAATCCCAACCGGTGAACATGAACTCCACATTGGTGATCTCAAACATTCAATTAATGTCCAAACTACGCATTGAATCAAGCACTAAAAGATGATTAATTTAACTGTCAAGAAAATTTGACAGATACAACTGAAAGTTTTGCAAATGGCAAAAAACATATGGAGAATAAAGAAAAAAAAAAAAAAAACAGAAAGTGTTGTCTCTCCCTGCAAATGTAAAAATAAGGATACATATATATAGGTGGCAATTGTAATTTGTAAACCAACAATCATAGTGGCAAAGTGTATTATTGATACTTCATATGTTGAAAAAAGGGTTTTAATTTTAATCAAAGTTGAAGTTCTTATTTCTTTCTCATTCAATCTTGAACAAGCTA
>Glyma09g04337.1 sequence type=CDS gene model=Glyma09g04337 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTGTGAAAATGACAAAAAAGGCCACCTATTACTTGCCCTAGGGCTAGTGCTCTGCGTCACCCTGACCTTCTTCCCAAGGGTGACCGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGGCTCACGAGGGGGTTCAAGTTCTGCAACACGCACGTGCCGATCCACGTGAGGGTGCAGGACCTCATAGCGAGGCTCACATTGCCGGAAAAAATTAGGCTCGTCGTTAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGATACGAGTGGTGGTCGGAGGCGCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCTCAAGTCATCTCAACCGCTGCTTCGTTTAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCGACATTGGCCGCAAAATACGCCGCCAGCTATGTCAAAGGACTCCAAGGCGATGGTGCCGGAAATCGCCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAATTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGACACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCAAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATTCGTGGCCAATGGGGCCTCAATGGGTATATTGTTTCGGACTGTGACTCGGTTGGAGTTTTCTTTGACAATCAACACTACACAAGAACACCTGAGGAGGCAGCTGCTGAGGCCATCAAAGCTGGCCTGGACTTGGATTGTGGCCCATTCTTGGCTATCCACACTGATTCTGCCATTAGGAAGGGACTCATTTCAGAAAATGATCTTAACCTTGCATTGGCCAACCTTATTACAGTCCAAATGAGATTGGGTATGTTCGACGGTGAACCATCAACCCAACCATTCGGAAACTTGGGCCCAAGAGATGTTTGCACCCCAGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTGCTACAAAATAAAGGAAACTCCCTACCACTATCCCCTTCAAGACTTCGTATCGTAGGAGTCATTGGACCCAATACGGATGCTACCGTTACAATGATCGGAAACTATGCTGGTGTGGCATGTGGTTATACCACCCCTTTGCAAGGAATTGCGAGGTATGTAAAGACGGCTCATCAAGTAGGTTGTAGGGGTGTCGCTTGCAGGGGAAATGAACTATTTGGTGCCGCAGAGATCATAGCTAGGCAAGTTGATGCGACTGTTCTAGTAATGGGCCTTGACCAAACCATAGAAGCGGAAACAAGAGATAGGGTTGGGCTTCTCTTACCAGGCCTTCAACAAGAACTTGTGACTAGGGTGGCCAGGGCCGCTAAGGGCCCCGTTATCTTGGTCATCATGTCTGGTGGCCCGGTTGATGTTTCGTTTGCTAAAAATAACCCTAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGCCAAGCTGGGGGAACTGCCATTGCTGATGTGATCTTTGGTGCAACCAACCCAGGAGGAAGGTTACCCATGACATGGTACCCACAAGGGTATTTGGCTAAAGTGCCGATGACAAACATGGACATGCGTCCAAACCCAGCAACAGGATACCCAGGAAGAACCTACAGATTCTACAAAGGACCAGTGGTGTTCCCATTTGGACATGGACTAAGTTACTCAAGATTCAGCCAAAGCTTAGCACTTGCTCCAAAACAGGTCTCGGTGCAAATACTGAGCCTCCAAGCCTTGACAAACTCAACCCTCTCAAGCAAAGCAGTGAAGGTGAGCCATGCCAATTGTGACGACTCATTGGAGACGGAATTCCACGTTGACGTGAAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCATATTCTCGAAACCACCCCCGGGAAAATGGTCACAAATTAAACAGTTGGTGACCTTCCACAAGACCCATGTTCCTGCTGGCTCCAAGCAACGACTTAAGGTTAATGTTCATTCCTGCAAACACTTGTCCGTTGTGGACCAGTTTGGGGTTCGAAGAATCCCAACCGGTGAACATGAACTCCACATTGGTGATCTCAAACATTCAATTAATGTCCAAACTACGCATTGA >Glyma09g04337.2 sequence type=CDS gene model=Glyma09g04337 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTGTGAAAATGACAAAAAAGGCCACCTATTACTTGCCCTAGGGCTAGTGCTCTGCGTCACCCTGACCTTCTTCCCAAGGGTGACCGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGGCTCACGAGGGGGTTCAAGTTCTGCAACACGCACGTGCCGATCCACGTGAGGGTGCAGGACCTCATAGCGAGGCTCACATTGCCGGAAAAAATTAGGCTCGTCGTTAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGATACGAGTGGTGGTCGGAGGCGCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCTCAAGTCATCTCAACCGCTGCTTCGTTTAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCGACATTGGCCGCAAAATACGCCGCCAGCTATGTCAAAGGACTCCAAGGCGATGGTGCCGGAAATCGCCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAATTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGACACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCAAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATTCGTGGCCAATGGGGCCTCAATGGGTATATTGTTTCGGACTGTGACTCGGTTGGAGTTTTCTTTGACAATCAACACTACACAAGAACACCTGAGGAGGCAGCTGCTGAGGCCATCAAAGCTGGCCTGGACTTGGATTGTGGCCCATTCTTGGCTATCCACACTGATTCTGCCATTAGGAAGGGACTCATTTCAGAAAATGATCTTAACCTTGCATTGGCCAACCTTATTACAGTCCAAATGAGATTGGGTATGTTCGACGGTGAACCATCAACCCAACCATTCGGAAACTTGGGCCCAAGAGATGTTTGCACCCCAGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTGCTACAAAATAAAGGAAACTCCCTACCACTATCCCCTTCAAGACTTCGTATCGTAGGAGTCATTGGACCCAATACGGATGCTACCGTTACAATGATCGGAAACTATGCTGGTGTGGCATGTGGTTATACCACCCCTTTGCAAGGAATTGCGAGGTATGTAAAGACGGCTCATCAAGTAGGTTGTAGGGGTGTCGCTTGCAGGGGAAATGAACTATTTGGTGCCGCAGAGATCATAGCTAGGCAAGTTGATGCGACTGTTCTAGTAATGGGCCTTGACCAAACCATAGAAGCGGAAACAAGAGATAGGGTTGGGCTTCTCTTACCAGGCCTTCAACAAGAACTTGTGACTAGGGTGGCCAGGGCCGCTAAGGGCCCCGTTATCTTGGTCATCATGTCTGGTGGCCCGGTTGATGTTTCGTTTGCTAAAAATAACCCTAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGCCAAGCTGGGGGAACTGCCATTGCTGATGTGATCTTTGGTGCAACCAACCCAGGTAAATTGTTCTCACACCATTATCTTGAATTCATTTCATATACAATATAA
>Glyma09g04337.1 sequence type=predicted peptide gene model=Glyma09g04337 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACENDKKGHLLLALGLVLCVTLTFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVISTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWGLNGYIVSDCDSVGVFFDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLITVQMRLGMFDGEPSTQPFGNLGPRDVCTPAHQQLALEAARESIVLLQNKGNSLPLSPSRLRIVGVIGPNTDATVTMIGNYAGVACGYTTPLQGIARYVKTAHQVGCRGVACRGNELFGAAEIIARQVDATVLVMGLDQTIEAETRDRVGLLLPGLQQELVTRVARAAKGPVILVIMSGGPVDVSFAKNNPKISAILWVGYPGQAGGTAIADVIFGATNPGGRLPMTWYPQGYLAKVPMTNMDMRPNPATGYPGRTYRFYKGPVVFPFGHGLSYSRFSQSLALAPKQVSVQILSLQALTNSTLSSKAVKVSHANCDDSLETEFHVDVKNEGSMDGTHTLLIFSKPPPGKWSQIKQLVTFHKTHVPAGSKQRLKVNVHSCKHLSVVDQFGVRRIPTGEHELHIGDLKHSINVQTTH* >Glyma09g04337.2 sequence type=predicted peptide gene model=Glyma09g04337 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACENDKKGHLLLALGLVLCVTLTFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVISTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWGLNGYIVSDCDSVGVFFDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLITVQMRLGMFDGEPSTQPFGNLGPRDVCTPAHQQLALEAARESIVLLQNKGNSLPLSPSRLRIVGVIGPNTDATVTMIGNYAGVACGYTTPLQGIARYVKTAHQVGCRGVACRGNELFGAAEIIARQVDATVLVMGLDQTIEAETRDRVGLLLPGLQQELVTRVARAAKGPVILVIMSGGPVDVSFAKNNPKISAILWVGYPGQAGGTAIADVIFGATNPGKLFSHHYLEFISYTI*
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