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Report for Sequence Feature Glyma09g04200

Feature Type:gene_model
Chromosome:Gm09
Start:3061930
stop:3063799
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g04200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16260AT Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344 SoyBaseE_val: 1.00E-130ISS
GO:0002215GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to nematode SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PF00332PFAM Glycosyl hydrolases family 17 JGI ISS
UniRef100_P23535UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase, basic isoform n=1 Tax=Phaseolus vulgaris RepID=E13B_PHAVU SoyBaseE_val: 2.00E-176ISS
UniRef100_UPI00023385CEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023385CE related cluster n=1 Tax=unknown RepID=UPI00023385CE SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g04200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04200
ParalogEvidenceComments
Glyma15g15211 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g037200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g04200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g04200
>Glyma09g04200.2   sequence type=CDS   gene model=Glyma09g04200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCAAGAGGTTCTCATTGCCTACACTCTTGCTTCTTCTGGAGCTATTCACGATATACCTTCGCACTGCAGATATTGTTTCTTTTTTTGGCTAGTAGATGCTCAAATTGGGGTGTGTTATGGCATGATGGGCGACAATCTACCACTGGCAAATGAAGTTGTAAGTCTTTACAAATCCAACGACATAATGAGAATGAGAATCTATAATCCTGATCAAGCTGCTTTACAAGCACTGAGAAATTCGGGCATTGAGCTTATTCTTGGGACCTTCAAGGCCTTGCCACCTAGCACTGCTCAACAATGGGTGCAAAGTAACGTGTTGAACTTTTGGCCTAGTGTCAAAATCAAGCACGTGGTAGTTGGCAACGAAATTAATCCTGTTGGAAGCTCTTCTGAGTTTGCCCAATATGTTCTACCTGCAATCCAAAACATATACCAAGCTATAAGAGCTCAAGGCCTTCAAGATCTAATCAAGGTTACAACAGCTATTGACATGACCCTGTTAGGAAACTCCTACCCCCCATCACAAAGCTACTTCAGGACTGATGTGAGATCATACTTAGACCCCATAATTGGGTACTTGGTATATGCAAATGCACCTTTACTAGCCAATGTGTTGCCTTATTTTAGTTACTCCAATAACCCGATTGACATATCACTTTCCTATGCTCTTTTTAACTCAACAAATGTTGTGGTTTGGGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATGCGGTGCATGTTGCAATTGATAACACAGGGATTGGTTATGTGGAGGTTGTTGTATCCGAGAGTGGATGGCCCTCAGATGGAGGGTTTGCTGCCACTTATGACAACGCACATGTCTACCTGGAAAATTTGATTCTTCGTGCTAAAAGAGGTAGCCCAAGAAGACCTTCAAAGCCCACAGAAACTTATATATTCGACATGCTTGATGAGAATCTTAAGAGTCCTGAGATAGAGAAACATTTTGGACTCTTCTTTCCCAACAAAACAAAGAAGTATCCATTTGGATTTGTTTAG
Predicted protein sequences of Glyma09g04200
>Glyma09g04200.2   sequence type=predicted peptide   gene model=Glyma09g04200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NQEVLIAYTLASSGAIHDIPSHCRYCFFFWLVDAQIGVCYGMMGDNLPLANEVVSLYKSNDIMRMRIYNPDQAALQALRNSGIELILGTFKALPPSTAQQWVQSNVLNFWPSVKIKHVVVGNEINPVGSSSEFAQYVLPAIQNIYQAIRAQGLQDLIKVTTAIDMTLLGNSYPPSQSYFRTDVRSYLDPIIGYLVYANAPLLANVLPYFSYSNNPIDISLSYALFNSTNVVVWDGQYGYQNLFDAMLDAVHVAIDNTGIGYVEVVVSESGWPSDGGFAATYDNAHVYLENLILRAKRGSPRRPSKPTETYIFDMLDENLKSPEIEKHFGLFFPNKTKKYPFGFV*






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