SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56430 | AT | Annotation by Michelle Graham. TAIR10: nicotianamine synthase 4 | chr1:21137023-21137997 FORWARD LENGTH=324 | SoyBase | E_val: 2.00E-113 | ISS |
| GO:0030418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nicotianamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0030410 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nicotianamine synthase activity | SoyBase | N/A | ISS |
| PTHR11208 | Panther | RNA-BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR11208:SF2 | Panther | KH-DOMAIN RNA BINDING PROTEIN-RELATED | JGI | ISS | |
| PF03059 | PFAM | Nicotianamine synthase protein | JGI | ISS | |
| UniRef100_B9A9Z2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nicotianamine synthase n=1 Tax=Lotus japonicus RepID=B9A9Z2_LOTJA | SoyBase | E_val: 9.00E-168 | ISS |
| UniRef100_I1L0R6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0R6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g04100 not represented in the dataset |
Glyma09g04100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g036400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g04100.1 sequence type=CDS gene model=Glyma09g04100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACCAACAAGAAATGATGAAAGTAGAAAAGGTATGTGAAATCTATGAAAAAATCTCCAAACTAGAAGACCTCAACCCTTCAAACCATGTCAACAACCTCTTCACCCAACTTGTCACAATTTGCACCACCCCATGCCAAATAGATGTTACCAAACTAAGCCAACAAGTTAGAGAAACCATAGCCAAGCTAATTAGGCTTTGTGGGAAAGCTGAAGGGCTTCTTGAGAACCACTACTCAACCCTAATAGGATCATATGAGAACCCTTTAAGCCACATGAAACTCTTCCCTTACTACTCCAACTACTTCAAACTTAGCCACTTGGAGTTCACCATGTTAACCACTCACATCACACAAGTCCCTACCCAACTAGCCTTTGTGGGGTCAGGTCCTCTTCCTCTCACCTCAATCATGTTGGCCACACATTACCTCAAACACACATGCTTCCACAACTACGACATGGATCCATTGGCAAATGCCAAGGCCCATGAACTTGTCTCCTCGGACACCGACTTGTCGAAGAGGATGTTCTTCCACACTTGTGACATTCTAAACGTGTCGAATGGCCTCAAGGACTACAACGTGGTGTTCTTGGCAGCACTTGTGGGAATGGACCATAAGGAGAAAGGAAGAGTCATTAGCCACTTGGCCAAATTCATGGCTCCTGGGGCTATTTTGTTGCTGAGGAGTGCACATGGTGCTAGGGCTTTTCTCTACCCTGTGGTTGATCCTTCTTCTGATCTCAAAGGCTTTGAAGTTCTATCGGTTTTTCACCCCACTGATGAGGTTATTAACTCGGTTATTGTTGCACGCAAAGGGCTTTATTCATCACCAGTGTTGGCTAGCAAATGCTCTGGAGTTGAAGGGTTTAATCACTTCAACCATGGGAATGTTATTGAGGAGTTGACCGTTGACGATCAGGCTTGA
>Glyma09g04100.1 sequence type=predicted peptide gene model=Glyma09g04100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENQQEMMKVEKVCEIYEKISKLEDLNPSNHVNNLFTQLVTICTTPCQIDVTKLSQQVRETIAKLIRLCGKAEGLLENHYSTLIGSYENPLSHMKLFPYYSNYFKLSHLEFTMLTTHITQVPTQLAFVGSGPLPLTSIMLATHYLKHTCFHNYDMDPLANAKAHELVSSDTDLSKRMFFHTCDILNVSNGLKDYNVVFLAALVGMDHKEKGRVISHLAKFMAPGAILLLRSAHGARAFLYPVVDPSSDLKGFEVLSVFHPTDEVINSVIVARKGLYSSPVLASKCSGVEGFNHFNHGNVIEELTVDDQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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