Glyma09g04031 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g04031

Feature Type:	gene_model
Chromosome:	Gm09
Start:	2952380
stop:	2959611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g04031

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58040	AT	Annotation by Michelle Graham. TAIR10: homolog of yeast FIP1 [V] \| chr5:23488865-23494000 FORWARD LENGTH=1196	SoyBase	E_val: 2.00E-23	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR13484	Panther	FIP1-LIKE 1 PROTEIN	JGI		ISS
PF05182	PFAM	Fip1 motif	JGI		ISS
UniRef100_G7JNW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA polyadenylation factor fip1 n=1 Tax=Medicago truncatula RepID=G7JNW3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C785	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C785 related cluster n=1 Tax=unknown RepID=UPI000233C785	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g04031

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g04031 not represented in the dataset	Glyma09g04031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g04031

Paralog	Evidence	Comments
Glyma15g15056	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g04031 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g035800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g04031

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g04031

Limit To All Plant Sequences

>Glyma09g04031.1   sequence type=CDS   gene model=Glyma09g04031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTTTAGACGATGACGATTTCGGCGAACTCTACACTGTCGACATTGAAGTTCCCAATGCCATCCCCGAAGAAGAAGAAGAAGAAGAAGAAGATGAAATTGATGTAAACAGTAACATTGTGAATCTTGATAAGGATATGGACAGCGAGACAGTGAATGATGACTGTGCTGCTGAGAGTGACAGCAGCGACGACGACGACGGTCTGAAAATCGTGCTGAATGACGAGGATATTCCTGTCGGAGCTGATGCTCGCGACGAAGGCAATGGCGACAACGGTGATGATAACAATGGTTCCAGATTTTTTCATCCTAAGACTGGGAGGAGTCGAGGATTGGCGATTTTGAATAATATGAAGGCCAATGCGTCCATGGGTATGGCTTCTTACATTTCATCGTTGAACAAAGGGAGGAGGAATGGCGATGCCTGCATCCAGAACCTTGCTTTGAGCTCCTCTCGAGTGTGTCTTGCAGCAAATCCTATGGCTGTTCAATGTGGATATGGATCGGCTCTTCCTTGGTACTGGGGTATATTTGATGTAAACACTGATACATTAACGGAGAAGCTATGGAAGGTTCCTGGAGTTGACATAACGGATTACTTTAACTTTGGTTTTAATGAGAGCACTTGGAAGTTATACTGTTCTTCATTGGAGCAACTTTGGCGAACATCCTTGCAAACTGGTATTTCTGTTGATGACGCTGCAAACTGGAATCAGGAAGTCATGAGAGAGCAAACTGATCAAGTTGTGTCAGGAAATGCATTTTTTCCTTCATCAGATTGTGGATTGCCAAAAGGCAGAGCAATTCAGGTTGAGGACAGCATGGTTGAACGACAGCCATCCATAGATGTAAGGCGTCCACGTAATAGGGATTTTAATGTTATAGAGATCAAGCTGCTTGACTCCTCTGATGACTGTTCTGGTTCTGGCAATAGCACTGTAATGAATGCATCATTAGAAGGCGAATCTATGGCAGGCAATAAGAGAAGTGTTCTCAATTCTTCTGGTGAGCTCAATGAAATGCTGTCTGAAGATCAGTTGGAAGATGTGAAAAAAGCAGAGGACTCTTCTCTTCATAGAAGAAGCGGGCCGATTCCTGGTGTAGATGGAGATGAGCATCGGGATCAAGCAGACCAACATTCTGAAGATACTGCAGAAGTGCCAGAGGGAGAAACAAAAGCAGAGGAAGGTGGTGGCATAGACGCATGTAGTTCTTATCCATGTTGGATTGAATCAGAATTGTCTCTTGGAGATCAAGAGCATAGCCTGACTTCCTATACTGATAGCGATTCTGAGGCAATGGATAACAGTGTACAAGTTGATAATGATAAAAGTTTCAGCCCTTTAAAAAGGAAATCGTTGAATTGTGTCACTGACATGAAGGAGTCTTTGCCACTTTGTTGGAAGAATTCAAAGAACAATAGTATCAATAAAAAAGCAGTAAGTGCAGCTTATAATTCAAGAACTAGAGGTCAATTCAGAAAGGAATGGAGGCACCGAAGTGGTGGATATGAACCTAGTAGTTATGATATAAATAAGCACACTGAAAATGATAATGATGTCTCCATCCTCAAGTCCAGTGCAAGGAATCTGTCTCTGTTGGCTCGCCGACCAGTTGATTATGGCAGACATAAAGACCGACTGCAAGTTTTTGGCAGTCATAAAATAAGAGATCTTTCATGTAATAGGGAAACAAAACAATCCTACTATTATGGCGATGAAAAGGTTGTTGATGAGTTGGTTGCATGCCGCTCTAAATATTATCATGAAGATCAAGAAAGCTTAAGGGAGAATACAAACCGACATGACCGAAAAAATGGGGATGTGGAGGATTATTTTTTTGAACCAGGCCCTCGATTTGCAGATAGTGAGGACAGAGAGAGAGATTGGTATCATCTTGGTTGTGAGTACTCTTCTGATGACCTGAGTCCTTGCTCCTACAGGGAGTCAAGGAAGTTTCCTCCAAAACATTCATCTTTTCCTGATGAAGAGAGGTATACTCAAGGGAAAAGAATGGATGGAAAATCCCATTTTATAGACAGAAATTGCATTGATGATTTTGATGAATGCGAGTTTAAGTTTCTAAACAAGAGCTATAGAATGTCTACTATTGCTGAGAGAGAACTGGAATTTTTAGATAATTATCGTGAAGAGCAGTTTCCACATATTGATAGAGATTGGAGAAGATCTGTCTGTAGGGGAAGACATTATGATAGCCCCCCTTTAGTTCTGAATAACTTGTGTTCTGGGATAATGGAAGTTGAAGATAATTGTCAGAAATATACACATTGCCAGACTTCAAGTTTTAAGTATCGTAGACAATCTTATACAGATTCAGCGAAAAATTATGCATATGGGGAAAGAGTAAATGGAAACTTTGGGGGTTCGGGGAGAGATAAGCATGCTAGGGACAACAGAGGCAGTAACTGGTTGTGTGGTTATACTGACACTGCTGAAGATGAAGATTTCCCAATTTATCCTGTAAAAAAGTATCAGTTTTACAGGTCCCCATCTAAGTTCCTGAACTGGACAGAGGATGAAATTATTTATAGACATCATGAAACTCATGCAACATCTCTGTTTGCTAAGGTTCAGAGTGATGATTTGCCATTGCAGCGGCATCAGCTAAGCATGCCAATACGAGATAGTGAGAAATATTTTAAAGGTAGCTCTAAGATTATGTGCAGAAGTAAGGGTGGGCAGGCATTGCTGAGATGCAGGAAATCAGTTGACTTGATTCATGGGGAAGGAAAGTCTCAAGTGAGAAGTTCCAGAGTCTTGTGCAATGGCAGGCTTGAAAATGCCAACCAGAGGATTGCTAAGAAGCGGAGGAGAGCTGCAGTGGGTTTTGATGAATCTAATAAAAATGCCAGCAAATTTGACACCCCAAAACACAAGAGCAACCAGGAAAGTAAGAAATGGGTGCAGGACCTTCAAGATCAAGCGCAGAAAGAAAGCTCAGAAATCGAGGAAGGTCAGTTTGTAGCAGAAGAACCATACATGGAGGAGGCTTCTGAAGGTCCAGCAGTGACTGATGGTGTGAACAAGAAGAGAATGTCACAAAATGAAAATAGTTCTGAGCAATGTATTGGTGGTTACGACAGTCAAAGGATTCTTGATTCATTAGCCAAGATGGAGAAACGTAGGGAGCGCTTTAAGCAACCCATGACAATGAAAAAAGAAGCAGAAGAGAGTTTGAAGCTCAACGATGATTCCATTGTAGATAAAGGTGAAATGAAGCAACATAGACCAGCTCGAAAGAGGCGTTGGGTTGGTAATTAG

Predicted protein sequences of Glyma09g04031

Limit To All Plant Sequences

>Glyma09g04031.1   sequence type=predicted peptide   gene model=Glyma09g04031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGLDDDDFGELYTVDIEVPNAIPEEEEEEEEDEIDVNSNIVNLDKDMDSETVNDDCAAESDSSDDDDGLKIVLNDEDIPVGADARDEGNGDNGDDNNGSRFFHPKTGRSRGLAILNNMKANASMGMASYISSLNKGRRNGDACIQNLALSSSRVCLAANPMAVQCGYGSALPWYWGIFDVNTDTLTEKLWKVPGVDITDYFNFGFNESTWKLYCSSLEQLWRTSLQTGISVDDAANWNQEVMREQTDQVVSGNAFFPSSDCGLPKGRAIQVEDSMVERQPSIDVRRPRNRDFNVIEIKLLDSSDDCSGSGNSTVMNASLEGESMAGNKRSVLNSSGELNEMLSEDQLEDVKKAEDSSLHRRSGPIPGVDGDEHRDQADQHSEDTAEVPEGETKAEEGGGIDACSSYPCWIESELSLGDQEHSLTSYTDSDSEAMDNSVQVDNDKSFSPLKRKSLNCVTDMKESLPLCWKNSKNNSINKKAVSAAYNSRTRGQFRKEWRHRSGGYEPSSYDINKHTENDNDVSILKSSARNLSLLARRPVDYGRHKDRLQVFGSHKIRDLSCNRETKQSYYYGDEKVVDELVACRSKYYHEDQESLRENTNRHDRKNGDVEDYFFEPGPRFADSEDRERDWYHLGCEYSSDDLSPCSYRESRKFPPKHSSFPDEERYTQGKRMDGKSHFIDRNCIDDFDECEFKFLNKSYRMSTIAERELEFLDNYREEQFPHIDRDWRRSVCRGRHYDSPPLVLNNLCSGIMEVEDNCQKYTHCQTSSFKYRRQSYTDSAKNYAYGERVNGNFGGSGRDKHARDNRGSNWLCGYTDTAEDEDFPIYPVKKYQFYRSPSKFLNWTEDEIIYRHHETHATSLFAKVQSDDLPLQRHQLSMPIRDSEKYFKGSSKIMCRSKGGQALLRCRKSVDLIHGEGKSQVRSSRVLCNGRLENANQRIAKKRRRAAVGFDESNKNASKFDTPKHKSNQESKKWVQDLQDQAQKESSEIEEGQFVAEEPYMEEASEGPAVTDGVNKKRMSQNENSSEQCIGGYDSQRILDSLAKMEKRRERFKQPMTMKKEAEESLKLNDDSIVDKGEMKQHRPARKRRWVGN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain