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Report for Sequence Feature Glyma09g03930

Feature Type:gene_model
Chromosome:Gm09
Start:2868163
stop:2872019
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g03930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06600AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2059558-2060458 REVERSE LENGTH=193 SoyBaseE_val: 2.00E-14ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1L0Q1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0Q1_SOYBN SoyBaseE_val: 8.00E-125ISS

Expression Patterns of Glyma09g03930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g03930
ParalogEvidenceComments
Glyma15g14893 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g03930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g034600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g03930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g03930
>Glyma09g03930.2   sequence type=CDS   gene model=Glyma09g03930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGCACCAAACACCACACAAAGTGTTCGCGCGCTCCACAGAGAATCGCCATGGCAGATTCAAGGATTTTCCGTCTAAGAAGTCGAACAAGATCACAGGTAATAACTTGAATGCTGCATTTGCATCCGTTTCTGAAGATTCCGTGGATTTATCACCGATCTCAGAGATCTCGTATGCAAATCACGGCGAAGATGTCACGTTTCAGACCTTCTTGTTGGAAGAACCTTCCTCGGTGACTTTGGTTCCATCTGATTTAACTCCTAAAGAAATCACTGACGCGACGGGAATTATTAGCTCCACTAATTCTATCAGCACCGATAAATTTGATAGTTCTAAGTTTAACTCTGTGGAAGCAGAGATTACTGTGAATTTTCTCAGAAATGTGAAAACTGATGTCCTCAACGCTGCTCCCCAATGTAGAAGAGAGCTTATGGATGGAATAATTGAGTATGTTATAAGCGATCTCCAAACCTATACCCTGCCAGAGGAGAGAGATCAGTTTGCTCATTTGCTTTCGATGAAAAATCGAATGTTGTTTCTGTGTACCTTCATTTGGGTAATTGGAGTATCAGTTCTGCTTTTCTTCACTTCGTATACTCGTGGCCCTTACAGAGGACCGACGCCAACCTGA
Predicted protein sequences of Glyma09g03930
>Glyma09g03930.2   sequence type=predicted peptide   gene model=Glyma09g03930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEHQTPHKVFARSTENRHGRFKDFPSKKSNKITGNNLNAAFASVSEDSVDLSPISEISYANHGEDVTFQTFLLEEPSSVTLVPSDLTPKEITDATGIISSTNSISTDKFDSSKFNSVEAEITVNFLRNVKTDVLNAAPQCRRELMDGIIEYVISDLQTYTLPEERDQFAHLLSMKNRMLFLCTFIWVIGVSVLLFFTSYTRGPYRGPTPT*






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