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Report for Sequence Feature Glyma09g03870

Feature Type:gene_model
Chromosome:Gm09
Start:2794205
stop:2795193
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g03870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36110AT Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:15161877-15162596 FORWARD LENGTH=239 SoyBaseE_val: 2.00E-45ISS
GO:0006139GO-bp Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008408GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity SoyBaseN/AISS
PTHR13620Panther 3-5 EXONUCLEASE JGI ISS
UniRef100_G7IMS1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 3-5 exonuclease/ nucleic acid binding protein n=1 Tax=Medicago truncatula RepID=G7IMS1_MEDTR SoyBaseE_val: 3.00E-63ISS
UniRef100_I1L0P5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0P5_SOYBN SoyBaseE_val: 4.00E-143ISS

Expression Patterns of Glyma09g03870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g03870 not represented in the dataset
Glyma09g03870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g03870
ParalogEvidenceComments
Glyma15g14810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g03870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g033900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g03870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g03870
>Glyma09g03870.1   sequence type=CDS   gene model=Glyma09g03870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGTCACCTACATAGAGCGCCGTTACAACCACGACATCTACACCGTCTGTCTCGCCGAAAACTACATCACCGTCACCGTCACCGCCAGCGCCTCCGTGGTCAAGCGGTGGCTCTCCTCCACGCTCTACTTCAACCGCTACTTCGTCGACCAGGAGCGCCTCGTTGTCGGCCTCGGCGTGCAGTGGACTCGCGGCGGCCACGATCCTCCGCCGGACACGCTTCAGCTCTGCGTCGGCCGCCGCTGCCTCATCTTCCAGCTCGCGCACGCCGACTACGTGCCGGAGAGCCTCCGCACGTTCCTGAACGATCCTTCGCACACCTTCGTCGGATTCTGGAACCACTCCGATCGCCTTAAGCTCGCGTGTTCGGAGCACGAGTTGGAGATGGCGATGGATCCTCTGGATCTGAGGCTCTGCTTCGAGAGCCTCACGCGGGATTCGGTGGAAGCGATCGTAGCGAAGTGCCTCGGTTACCGAGTGCCGCAGCGGAGAGACATAAGCGTGAGCGCGTGGTATGCTGAATATCTCAGCAACGATCAAGTTGCTTATGCGACGGTTGATGCTTTCTGCGCGTTCCTCATCGGTAGGAATATCAGAGCCTGGCAATTCATCTGA
Predicted protein sequences of Glyma09g03870
>Glyma09g03870.1   sequence type=predicted peptide   gene model=Glyma09g03870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVTYIERRYNHDIYTVCLAENYITVTVTASASVVKRWLSSTLYFNRYFVDQERLVVGLGVQWTRGGHDPPPDTLQLCVGRRCLIFQLAHADYVPESLRTFLNDPSHTFVGFWNHSDRLKLACSEHELEMAMDPLDLRLCFESLTRDSVEAIVAKCLGYRVPQRRDISVSAWYAEYLSNDQVAYATVDAFCAFLIGRNIRAWQFI*






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