Glyma09g03500 - SoyBase

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Report for Sequence Feature Glyma09g03500

Feature Type:	gene_model
Chromosome:	Gm09
Start:	2496747
stop:	2500152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g03500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30630	AT	Annotation by Michelle Graham. TAIR10: Coatomer epsilon subunit \| chr1:10858546-10860173 REVERSE LENGTH=292	SoyBase	E_val: 7.00E-172	ISS
GO:0006890	GO-bp	Annotation by Michelle Graham. GO Biological Process: retrograde vesicle-mediated transport, Golgi to ER	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0030126	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG3081	KOG	Vesicle coat complex COPI, epsilon subunit	JGI		ISS
PTHR10805	Panther	COATOMER EPSILON SUBUNIT	JGI		ISS
PF04733	PFAM	Coatomer epsilon subunit	JGI		ISS
UniRef100_C6TGT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TGT0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5QQ34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coatomer epsilon subunit n=1 Tax=Medicago truncatula RepID=Q5QQ34_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g03500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g03500

Paralog	Evidence	Comments
Glyma15g14446	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g03500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g030400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g03500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g03500

Limit To All Plant Sequences

>Glyma09g03500.1   sequence type=CDS   gene model=Glyma09g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACCGGACCACCTGTTCAACCTCCGCAACAACTTGTATCTCGGGGCGTACCAAGCCGCCATCAACAGCGGCGACGTCACCAACCTCTCCCAAGAAGACTCCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTTCAGTTCGTCATCTCCGAGATCCATGACGACGCTCCCACACCTCTCCAAGCCGTCAAACTCCTCGCTCTCTATTTCTCCTCCCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTTGCCGATCCCGCCATTGCAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCATGAAAATGATTTCAACGAAGCCCTCAAACACACCAATGCTGGTGGAACCATGGACCTGCACGCGTTGAATGTTCAGATCTTTATTAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTTCGGATCATGCAGCAGATTGATGAAGATCACACTCTCACTCAACTCGCCAATGCCTGGCTCAATTTGGCTGTGGGTGGGTCAAAGATCCAGGAGGCGTATCTGATCTTCCAGGATTTGTCGGAGAGGTATCAGTCCACCAGCTTGCTTTTGAATGGCAAGGCTGTTTGCTGCATGCACATGGGCAACTTCGACGAAGCCGAGACCCTTTTGGTTGAAGCTCTAAACAAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTATGCTGTCTTCACCTCGGCAAACCATCTAACAAATCATTCAGCCAGCTGAAAATTTCTCATCCAGAGCATGTATTGGTCAAACGGGTATCATCAGCTGAAGAAAGTTTTGATAGAGCGCTACAATCATTTTCCTCATGA

Predicted protein sequences of Glyma09g03500

Limit To All Plant Sequences

>Glyma09g03500.1   sequence type=predicted peptide   gene model=Glyma09g03500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPDHLFNLRNNLYLGAYQAAINSGDVTNLSQEDSLERDTLVHRCYIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIANNATLRLVAGLVFLHENDFNEALKHTNAGGTMDLHALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKSFSQLKISHPEHVLVKRVSSAEESFDRALQSFSS*

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