Glyma09g03451 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g03451

Feature Type:	gene_model
Chromosome:	Gm09
Start:	2438308
stop:	2442534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g03451

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30650	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 14 \| chr1:10868612-10870973 FORWARD LENGTH=430	SoyBase	E_val: 7.00E-91	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G3FF80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 14-1 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF80_9ROSI	SoyBase	E_val: 2.00E-139	ISS
UniRef100_UPI0002338028	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338028 related cluster n=1 Tax=unknown RepID=UPI0002338028	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma09g03451

Locus	Gene Symbol	Protein Name
	WRKY116	WRKY Transcription Factor

Expression Patterns of Glyma09g03451

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g03451 not represented in the dataset	Glyma09g03451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g03451

Paralog	Evidence	Comments
Glyma15g14371	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g03451 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g029800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g03451

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g03451

Limit To All Plant Sequences

>Glyma09g03451.2   sequence type=transcript   gene model=Glyma09g03451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTTGTGTTATTTTATTAGTCCAACCCTTTTTTTGATTTAAAATTCCTTCTCTCTCCTGATGTTGCGTGTATTGAATGGAACTGTTTTGTGTGAAAAGTCAGCGTCTCTGTCTCTCTCTATAAACCCATTCTCTTTTGTTTGTTATTGAAGAGGAAGAACAATCAGTTTCAACCCCCCAAAAACCTGTTCCTTAATTTGCTTTTTCTTGCTTCTTAACAGCCAAACCCAGGAGAAAGCCTTTCCGCTCATACCCCCCCTTCTTAATAATCTCTAGCCTAGCTCCAAACAAATTAAAATTCCCACAACAATTGCATGTGTCTCTCATCATATCATCACATATCTTTCTCTAATTATATTGTTGTCTCATACTCCAACATCATCCATCATCTTCTATGCTAGCTCCAAAACATGTCACACACATACCCTTCTAATTCCTCCTCTTCATACTTGAATATAGCATCAACAAGCTCAAGCTCTTGGTCTTGTTCTTCTTCTTCCACTAATAGCTAGGGAAAAAAAAGCATGTACTGCAGCAGCATAATCATGGACAATTACCAAGGTGATTTAACTGACATACTCCGAGCAAGTGGTGGAGCATATGGTAGCACAGGCACAGGCACAGGAACTTCATCATCTGATCAATTACATACCACATCTCATCATCATCATCATTCTTCTTCTCACACCACCCTCTCTCATAATGATCACTGGCACCACCACCAACACTTCTCTTCTTCTTCTTCTGATCCTCCCATCACTTTCTCATCTTCTTCTTCTGTGCTAATTCAAGACACAAACTTTGGTGATCCTTTCTCAACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCAGCTTCTGCCTACTTCACTGGTGGTGCCTTGGAATTAGAAGCAGCTGCAACTTTTGGTTCTGTTACTAATAATACTACTAGTTCTACTACTGCTACTACTGTTTTTGCTACTGCACACAAGATTCTTGAGGAACATGACAACAACAACATGAGAAGGCCTTGCAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAAGTTACCAATCTCACCATATGATTCCACCAACACAGCCATGGCACCTTCTCCAAGGCCAATTAAGCCTCCTGCTTTGGTTTCACCCAACATGGTGATGAATGCAAACACCTCCAAGGAATGCCTTGTAGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAAAGAAGGAAGAACCAGGCCAAAAAGGTTGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCGTCTGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTACAGATGCAGTAGCTCAAAGGGTTGTTCTGCGAGGAAGCAAGTTGAGAGGAGCAGGAATGACCCAAACATGCTGGTTATCACATACACATCAGAGCACAACCATCCATGGCCAAAACAAAGAAATGCTCTGGCTGGTTCAACAAGATCACAGCCATCCAAGAACAACAACAATGCTGCTGCTTCCAATTCAAAGAATTCAGAAGGCTCAAACTCCCAAAAGGGTACAGCAACAAAAGCAAAGGATGATGAAGAGAGCAACAATTATAACAATAGCAGTGAGGGCAATGTGTCCCCAGTTGTGGCTGGGAACTCATCAAACAGTGTGAAGGAAGAGAATATGGAAGACATAGAGAAACATCAGATTGAGATGGATGAGGGAGAATTCAGTGATGGAATCCCTTATAAGCCTAGTTTGATGGATCATCAGAGTACTAATAACCAACAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCTTTGGACCTTTTGTTCACACAAGGTTTTGGTGGTGCTGATGATCAAAGGGAATCCAAGGCCTTGGATCCATTTCATCTCTTTGACTGGTCAGGAAACAACAACAACAACAACAACACAAGTAGTTCATTTGAAGAACCTAACAATAAGAGAAGGTTATAACAAGACCTAGAAAAAAAAAGGCATGCATCAGCACCTCCCTCACAAAAGACCTTAATTTTATGATCATGCTTTAAGTTTTATTTGGTGGTGCAAATATCATTCAAGGTCATGTTATGCTCTTTTTTTATTATTTGGTTTGAAATCTGTCTTGTGGGGGAGGGTGTGAGAGAGATTGAGATTTCCACTTTTTCTGCTTACAAGTTACTACTACTACCTTACCTTTTTCTTTTTTTCTTGTTATTTACCAGAACAGTCAGGGAGATAAAATTAGTAGAGTGAAAAAAAAGAAAAAGAAAGAGAGTGCTGGTTGATTGGAAGCAAACTCAAGGAGTCCCACATTCCTCTTGGAATATTGGTGGATGGGACAGAAAGCTGAGGAACAGAAGGTTGCAACAGTTAAAACAAGTACATTCACTATAGACATGACTCGAAAGCTCAGTGAGTAGATTGATGATGATAATGGGATGGGACTAGCCCTTTCATCTTTTCAAGTGGAAAAAATTATTTAAAAGCCACACCCCTTGGTCATGTGGGGTTTTCAGTTTTCTACACAAAAAGTGAAAAAAAAGAGAGATCAAAGATTTGCTTGCTGAGATGAAGTTTATGAAAGAAGACAAGAATTTATAGAGGGTTAAAGTTAAGTTTATATTATATTATATTATAGA

Coding sequences of Glyma09g03451

Limit To All Plant Sequences

>Glyma09g03451.1   sequence type=CDS   gene model=Glyma09g03451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTGCAGCAGCATAATCATGGACAATTACCAAGGTGATTTAACTGACATACTCCGAGCAAGTGGTGGAGCATATGGTAGCACAGGCACAGGCACAGGAACTTCATCATCTGATCAATTACATACCACATCTCATCATCATCATCATTCTTCTTCTCACACCACCCTCTCTCATAATGATCACTGGCACCACCACCAACACTTCTCTTCTTCTTCTTCTGATCCTCCCATCACTTTCTCATCTTCTTCTTCTGTGCTAATTCAAGACACAAACTTTGGTGATCCTTTCTCAACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCAGCTTCTGCCTACTTCACTGGTGGTGCCTTGGAATTAGAAGCAGCTGCAACTTTTGGTTCTGTTACTAATAATACTACTAGTTCTACTACTGCTACTACTGTTTTTGCTACTGCACACAAGATTCTTGAGGAACATGACAACAACAACATGAGAAGGCCTTGCAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAAGTTACCAATCTCACCATATGATTCCACCAACACAGCCATGGCACCTTCTCCAAGGCCAATTAAGCCTCCTGCTTTGGTTTCACCCAACATGGTGATGAATGCAAACACCTCCAAGGAATGCCTTGTAGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAAAGAAGGAAGAACCAGGCCAAAAAGGTTGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCGTCTGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTACAGATGCAGTAGCTCAAAGGGTTGTTCTGCGAGGAAGCAAGTTGAGAGGAGCAGGAATGACCCAAACATGCTGGTTATCACATACACATCAGAGCACAACCATCCATGGCCAAAACAAAGAAATGCTCTGGCTGGTTCAACAAGATCACAGCCATCCAAGAACAACAACAATGCTGCTGCTTCCAATTCAAAGAATTCAGAAGGCTCAAACTCCCAAAAGGGTACAGCAACAAAAGCAAAGGATGATGAAGAGAGCAACAATTATAACAATAGCAGTGAGGGCAATGTGTCCCCAGTTGTGGCTGGGAACTCATCAAACAGTGTGAAGGAAGAGAATATGGAAGACATAGAGAAACATCAGATTGAGATGGATGAGGGAGAATTCAGTGATGGAATCCCTTATAAGCCTAGTTTGATGGATCATCAGAGTACTAATAACCAACAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCTTTGGACCTTTTGTTCACACAAGGTTTTGGTGGTGCTGATGATCAAAGGGAATCCAAGGCCTTGGATCCATTTCATCTCTTTGACTGGTCAGGAAACAACAACAACAACAACAACACAAGTAGTTCATTTGAAGAACCTAACAATAAGAGAAGGTTATAA

>Glyma09g03451.2   sequence type=CDS   gene model=Glyma09g03451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTGCAGCAGCATAATCATGGACAATTACCAAGGTGATTTAACTGACATACTCCGAGCAAGTGGTGGAGCATATGGTAGCACAGGCACAGGCACAGGAACTTCATCATCTGATCAATTACATACCACATCTCATCATCATCATCATTCTTCTTCTCACACCACCCTCTCTCATAATGATCACTGGCACCACCACCAACACTTCTCTTCTTCTTCTTCTGATCCTCCCATCACTTTCTCATCTTCTTCTTCTGTGCTAATTCAAGACACAAACTTTGGTGATCCTTTCTCAACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCAGCTTCTGCCTACTTCACTGGTGGTGCCTTGGAATTAGAAGCAGCTGCAACTTTTGGTTCTGTTACTAATAATACTACTAGTTCTACTACTGCTACTACTGTTTTTGCTACTGCACACAAGATTCTTGAGGAACATGACAACAACAACATGAGAAGGCCTTGCAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAAGTTACCAATCTCACCATATGATTCCACCAACACAGCCATGGCACCTTCTCCAAGGCCAATTAAGCCTCCTGCTTTGGTTTCACCCAACATGGTGATGAATGCAAACACCTCCAAGGAATGCCTTGTAGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAAAGAAGGAAGAACCAGGCCAAAAAGGTTGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCGTCTGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTACAGATGCAGTAGCTCAAAGGGTTGTTCTGCGAGGAAGCAAGTTGAGAGGAGCAGGAATGACCCAAACATGCTGGTTATCACATACACATCAGAGCACAACCATCCATGGCCAAAACAAAGAAATGCTCTGGCTGGTTCAACAAGATCACAGCCATCCAAGAACAACAACAATGCTGCTGCTTCCAATTCAAAGAATTCAGAAGGCTCAAACTCCCAAAAGGGTACAGCAACAAAAGCAAAGGATGATGAAGAGAGCAACAATTATAACAATAGCAGTGAGGGCAATGTGTCCCCAGTTGTGGCTGGGAACTCATCAAACAGTGTGAAGGAAGAGAATATGGAAGACATAGAGAAACATCAGATTGAGATGGATGAGGGAGAATTCAGTGATGGAATCCCTTATAAGCCTAGTTTGATGGATCATCAGAGTACTAATAACCAACAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCTTTGGACCTTTTGTTCACACAAGGTTTTGGTGGTGCTGATGATCAAAGGGAATCCAAGGCCTTGGATCCATTTCATCTCTTTGACTGGTCAGGAAACAACAACAACAACAACAACACAAGTAGTTCATTTGAAGAACCTAACAATAAGAGAAGGTTATAA

Predicted protein sequences of Glyma09g03451

Limit To All Plant Sequences

>Glyma09g03451.1   sequence type=predicted peptide   gene model=Glyma09g03451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYCSSIIMDNYQGDLTDILRASGGAYGSTGTGTGTSSSDQLHTTSHHHHHSSSHTTLSHNDHWHHHQHFSSSSSDPPITFSSSSSVLIQDTNFGDPFSTMRDPFLQELDMPSASAYFTGGALELEAAATFGSVTNNTTSSTTATTVFATAHKILEEHDNNNMRRPCKNIFSNMIQISPNAKLPISPYDSTNTAMAPSPRPIKPPALVSPNMVMNANTSKECLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRNDPNMLVITYTSEHNHPWPKQRNALAGSTRSQPSKNNNNAAASNSKNSEGSNSQKGTATKAKDDEESNNYNNSSEGNVSPVVAGNSSNSVKEENMEDIEKHQIEMDEGEFSDGIPYKPSLMDHQSTNNQQSEDFFAELGEIEADPLDLLFTQGFGGADDQRESKALDPFHLFDWSGNNNNNNNTSSSFEEPNNKRRL*

>Glyma09g03451.2   sequence type=predicted peptide   gene model=Glyma09g03451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYCSSIIMDNYQGDLTDILRASGGAYGSTGTGTGTSSSDQLHTTSHHHHHSSSHTTLSHNDHWHHHQHFSSSSSDPPITFSSSSSVLIQDTNFGDPFSTMRDPFLQELDMPSASAYFTGGALELEAAATFGSVTNNTTSSTTATTVFATAHKILEEHDNNNMRRPCKNIFSNMIQISPNAKLPISPYDSTNTAMAPSPRPIKPPALVSPNMVMNANTSKECLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRNDPNMLVITYTSEHNHPWPKQRNALAGSTRSQPSKNNNNAAASNSKNSEGSNSQKGTATKAKDDEESNNYNNSSEGNVSPVVAGNSSNSVKEENMEDIEKHQIEMDEGEFSDGIPYKPSLMDHQSTNNQQSEDFFAELGEIEADPLDLLFTQGFGGADDQRESKALDPFHLFDWSGNNNNNNNTSSSFEEPNNKRRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain