SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05160 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490 | SoyBase | E_val: 0 | ISS |
| GO:0009686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0051777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ent-kaurenoate oxidase activity | SoyBase | N/A | ISS |
| KOG0157 | KOG | Cytochrome P450 CYP4/CYP19/CYP26 subfamilies | JGI | ISS | |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24286:SF24 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_Q84ZW1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ent-kaurenoic acid oxidase n=1 Tax=Pisum sativum RepID=Q84ZW1_PEA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D653 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D653 related cluster n=1 Tax=unknown RepID=UPI000189D653 | SoyBase | E_val: 0 | ISS |
|
Glyma09g03400 not represented in the dataset |
Glyma09g03400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g14330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g029400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g03400.1 sequence type=CDS gene model=Glyma09g03400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAATGATGATGATGATGTGTTCCATGTGGATGTGGGTTGTCCTTGTGGCCATTGCTGGTGCCCTTTTAGTCCTAAGATCTATCCTCAAGAATGTAAATTGGTGGCTCTATGAATCCAAATTGGGTGTGAAGCAGTACTCTTTGCCACCAGGTGACATGGGATGGCCCTTCATTGGCAACATGTGGTCCTTTCTCAGTGCTTTCAAGTCCAAGGACCCTGATTCCTTCATCTCCTCCTTTGTCTCCAGATTTGGAAGAACTGGAATGTACAAGACCATGATGTTTGGAAATCCAAGTATAATTGTGACAACACCTGAAATATGCAAAAGGGTGCTTACAGATGACGATAAATTCACACCTGGTTGGCCTCAATCTACTATAGAGCTCATTGGAAAGAGGTCATTTATTTCAATGTCTTATGAAGAACATAAGCGCCTTAGGCGTTTGACATCCTCTTCAATCAATGGCATGGAAGCACTGTCCCTCTACTTGACATATATTGAAAAAAATGTGAAATCTTCCTTGGAGAAATGGGCCAACATGGGACAAATTGAGTTCTTAACTGAGATCAGGAAGCTTACTTTCAAAATCATTATGCATATTTTCCTTAGCTCAGAGAGTGAACATGTTATGGAGGCTTTGGAGAGGGAATACACAGCACTTAATCATGGAGTTAGAGCCATGTGTATTAATATTCCCGGATTTGCATACCACAAAGCATTCAAGGCAAGGAAAAATCTAGTGGCCATATTTCAATCTATTGTGGACGAGAGAAGAAACTTAAGGAAGGGCTATCTGCCTGGAAAAGCCAAAGATATGATGGATGCTCTGATAGATCTTGAAGATGATGAAAGAAAGTTGAGTGATGAGGACATCATTGACATCATGTTGATGTACTTGAATGCGGGCCACGAGTCTTCAGGACATATTACCATGTGGGCAACCTTCTTCCTGCAAAAGCACCCAGAATATCTCCAAAAGGCTAAGGCAGAACAAGAAGAAATAATAAGGAGAAGGCCTTCAACACAGAAAGGGTTGACACTTAAGGAAGTTCGGGAGATGGATTTTCTTTATAAGGTGATTGATGAAACATTGCGTGTGATTACATTCTCACTAGTGGTCTTTCGGGAGGCAAAAACTGATGTTAATATCAATGGATACACAGTTCCAAAAGGTTGGAAAGTGCTTGTGTGGTTCAGATCAGTTCACCTTGATCCTGAAATATTTCCTGATCCAAAGGAATTTAACCCTAATAGATGGAATAAAGAGCACAAGGCTGGAGAATTCCTTCCCTTTGGAGGAGGAAGTAGATTGTGTCCTGGGAATGATCTTGCCAAGATGGAAATAGCAGTTTTTCTTCACCATTTCCTTCTGAATTACCGATTTGAACAGCATAATCCTAATTGCCCTGTGAGATACTTGCCACATACAAGGCCAATGGACAATTGCTTGGGAAGGGTCAGGAAATGTCCATCTACAACAACCTAA
>Glyma09g03400.1 sequence type=predicted peptide gene model=Glyma09g03400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMMMMMCSMWMWVVLVAIAGALLVLRSILKNVNWWLYESKLGVKQYSLPPGDMGWPFIGNMWSFLSAFKSKDPDSFISSFVSRFGRTGMYKTMMFGNPSIIVTTPEICKRVLTDDDKFTPGWPQSTIELIGKRSFISMSYEEHKRLRRLTSSSINGMEALSLYLTYIEKNVKSSLEKWANMGQIEFLTEIRKLTFKIIMHIFLSSESEHVMEALEREYTALNHGVRAMCINIPGFAYHKAFKARKNLVAIFQSIVDERRNLRKGYLPGKAKDMMDALIDLEDDERKLSDEDIIDIMLMYLNAGHESSGHITMWATFFLQKHPEYLQKAKAEQEEIIRRRPSTQKGLTLKEVREMDFLYKVIDETLRVITFSLVVFREAKTDVNINGYTVPKGWKVLVWFRSVHLDPEIFPDPKEFNPNRWNKEHKAGEFLPFGGGSRLCPGNDLAKMEIAVFLHHFLLNYRFEQHNPNCPVRYLPHTRPMDNCLGRVRKCPSTTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
