Glyma09g03380 - SoyBase

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Report for Sequence Feature Glyma09g03380

Feature Type:	gene_model
Chromosome:	Gm09
Start:	2371933
stop:	2375340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g03380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06430	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr5:1963580-1964251 REVERSE LENGTH=194	SoyBase	E_val: 1.00E-75	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
UniRef100_G7I3X1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thiol:disulfide interchange protein txlA-like protein n=1 Tax=Medicago truncatula RepID=G7I3X1_MEDTR	SoyBase	E_val: 1.00E-81	ISS
UniRef100_I1L0J8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0J8_SOYBN	SoyBase	E_val: 1.00E-134	ISS

Expression Patterns of Glyma09g03380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g03380 not represented in the dataset	Glyma09g03380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g03380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g029200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g03380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g03380

Limit To All Plant Sequences

>Glyma09g03380.3   sequence type=transcript   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATATTTTAAGTTTTAAACACTGCTACAGTCCACTCCTCTGCCGCAGTGTTGTAGATGTTGATCATTTGATGATGCTGTCCCTGTTGCCGGAAACGAAATGGGTTTGATTCCTAACCCTAACCCTAACCCTAATGCTAAACCCAAGCAACCTGCGTTTTGCTTAAAATGGCCATGGAATGATGCAAACCCTAGCCCTAGCCCTAGCCCCTGCAAGTTTGAGGGTCCTTTGCCATTGAAATCTCTCCAAAACCTTGGCTTAATCGCTTTCAATTTTGCGAGCTCTGTTTCGAGTTGGAAGAAGAAAACGAGTCCAGCTGCAGCGTCGGAGTCGGAGGCAGAGGCAGAGGCGTTTGCGTCGGCTCTGGCGAGCGGGAAGGAAGCGACTTTGTTGGAGTTCTACTCCCCCAAGTGCAGGCTCTGCAATTCCTTGCTCAAATTTGTCTCCGAAGTCGAAACCAGAAACTCTAATTGGCTCAACATTGTTATGGCTGATGCTGAGAACCCCAATTGGCTACCCGAGGTGATATTTTATCTCAATGCCAGTGACACACTAGGTTTTTCCACCACATGCCTAAATCAAGGAAGAGCTTTTGAAACAAACTTGTGCATGCTTGTCATCATTCTGTAAAACAATCTGGATTTGAATCATCTCCTTAATTATGATGTTAGCTATGTTCCTTGCTTTGTGCTTCTTGACAACAATGGAAAGGCCCTGGCAAAGACGGGTGTCCCAAATAGCCGTTTACATGTTATTGCAGGACTCTCCCATCTTCTCAAAATGAAGCGTCCTCAACAAAATAATGGATGATGAGCCTAGTGCATGAAAACCAACCTTCTGTTCAAGTACCAAGGCACCATAACAGGAGTTATACAGTTAACTTGATGGTTGAAGGAAAAAGTGGGAAGAAAGGAGTCGTGTGCTCAACTCTCTCACTAATATTCTAACAAAACTAACTTCGAACATTTTGGATTGCCTTGGTTTAACTTTAACACGGAATCATCATTATATGTAAATTAACTCACATTCTTATGTTTCCAAGAACTACTTGCACCAATGCTAACCTACATGCATGGTGAGTCTCGTATTGTTGTCATCTTTGTTTTGCATGTCAACGTGCATTTCATTATCTTAAGCAACGGTGCCCATATCCTTTGGGCTCTAAGGGAATCCTTTAAAGCC

>Glyma09g03380.4   sequence type=transcript   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATATTTTAAGTTTTAAACACTGCTACAGTCCACTCCTCTGCCGCAGTGTTGTAGATGTTGATCATTTGATGATGCTGTCCCTGTTGCCGGAAACGAAATGGGTTTGATTCCTAACCCTAACCCTAACCCTAATGCTAAACCCAAGCAACCTGCGTTTTGCTTAAAATGGCCATGGAATGATGCAAACCCTAGCCCTAGCCCTAGCCCCTGCAAGTTTGAGGGTCCTTTGCCATTGAAATCTCTCCAAAACCTTGGCTTAATCGCTTTCAATTTTGCGAGCTCTGTTTCGAGTTGGAAGAAGAAAACGAGTCCAGCTGCAGCGTCGGAGTCGGAGGCAGAGGCAGAGGCGTTTGCGTCGGCTCTGGCGAGCGGGAAGGAAGCGACTTTGTTGGAGTTCTACTCCCCCAAGTGCAGGCTCTGCAATTCCTTGCTCAAATTTGTCTCCGAAGTCGAAACCAGAAACTCTAATTGGCTCAACATTGTTATGGCTGATGCTGAGAACCCCAATTGGCTACCCGAGGTGATATTTTATCTCAATGCCAGTGACACACTAGGTTTTTCCACCACATGCCTAAATCAAGGAAGAGCTTTTGAAACAAACTTGTGCATGCTTGTCATCATTCTGTAAAACAATCTGGATTTGAATCATGTGACTAGCATACAACTCAATTGATTCTCTAGCACTGGTCTTCGGTCTTCCCAGTTTTGGCCAGGCTGGAAAAATGATCAAACAGCAATAAAAATGGATAACTCTTCATATAAGCTGCCTTTCTGTTTAATTTTCCTTTTTCTGTTATATTTTTTATTCTGTTAGTTCAGGGTTCCACTTGTTTTACATTGTTTAACATATTTGATTATTACTACTGTCATTTGTTTGTGCTATGGAAATTGGGTATACTTGTCATTGGTTTAAGATGGATTTTGGCTGGGTATCATACCTTATTAACATTTACTTTGTTGCTTTGTGAAAGTTTTTTTTTTATATTGTTTTGTTTCTTTAACTCAAAAGTACGAGTATATATCAAAGTTGGTCATTAGAAAGAATTAAATGTGACAAGGGAGCTTATCAAAGCTTAATATAATAATTATTCATGTTATCTCCTAGAGTAAGTATGCTGAACTACATTTGCGCAGACCTGACCTCGCACTGTCAGTCTCATGCTCCCAAGCCTTCTTTTCTCCTCCTCTTTTAGATGCAGACCTGTTTCTCTATCTTTTTTTTTCAAATGTGATGATCCTCAGTATATCCCTCTCGAGAAGTATTGCATTCTTGCCTCTTCTTGAAAATACTTTTTGGCTTTTTTATTTTTTGTTCATTCTTTCAGAATTACCTTTGCATGCAAACCATTCTAATTTTCTTTACACTCCAGCTGCTGCTTAAATGAGCTTAACCTGATATCTTGCCTTGGATTATGTACAGCATGCATTGTAACAAATGCTGCTTCCACATTAAACTTACCTTTTAACTGTCGGATTATACCTTGGACAATCTCATTTGTTAGCATATGCTATTAAAAATTGACAAATGGACAATGCCAGCATTTTATCCAAACAGAGAGTACCATCCCATCCTACGATCACTCTTGAGCCGAAAAGTTCAAAACATTACATTCTAAGTCCATTTTCATATATATGTCCTTCAATGCATCTAGTTTTGATATGCAAGGGATCCATTTTGACATATTTCTGTGTGAAACTTCAGATGATGGTTCTGACAAGAAACATCAATTTTTTGGAGGGGTATGGGAAGAGCATCAAATTTTAATTTAAGATTAAAACACATTGTTGATGAGAGATTTGAGGCCCTTATCCTTTACTTGATGGAAACAGCCGAGGTCCAAATTTAGGATGGACTTACAAGTTTTCTTTGAATACTTTAACCATTAATTAAAGCTATTACTTCTCGATATTCTTGCATGACCTTCATTGAAATTGGTTTTGCTATCTTTTATACCTTGAGGATAATGTTGTATACGAATAACTCAATATTTTATTTATTTGTTTAATCTCAGGAGAATACATTTTGTTCATAATGACTTCTTGCTGACTTATTTTTAAATCTTTCTATTGCAGCTCCTTAATTATGATGTTAGCTATGTTCCTTGCTTTGTGCTTCTTGACAACAATGGAAAGGCCCTGGCAAAGACGGGTGTCCCAAATAGCCGTTTACATGTTATTGCAGGACTCTCCCATCTTCTCAAAATGAAGCGTCCTCAACAAAATAATGGATGATGAGCCTAGTGCATGAAAACCAACCTTCTGTTCAAGTACCAAGGCACCATAACAGGAGTTATACAGTTAACTTGATGGTTGAAGGAAAAAGTGGGAAGAAAGGAGTCGTGTGCTCAACTCTCTCACTAATATTCTAACAAAACTAACTTCGAACATTTTGGATTGCCTTGGTTTAACTTTAACACGGAATCATCATTATATGTAAATTAACTCACATTCTTATGTTTCCAAGAACTACTTGCACCAATGCTAACCTACATGCATGGTGAGTCTCGTATTGTTGTCATCTTTGTTTTGCATGTCAACGTGCATTTCATTATCTTAAGCAACGGTGCCCATATCCTTTGGGCTCTAAGGGAATCCTTTAAAGCC

Coding sequences of Glyma09g03380

Limit To All Plant Sequences

>Glyma09g03380.1   sequence type=CDS   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGATTCCTAACCCTAACCCTAACCCTAATGCTAAACCCAAGCAACCTGCGTTTTGCTTAAAATGGCCATGGAATGATGCAAACCCTAGCCCTAGCCCTAGCCCCTGCAAGTTTGAGGGTCCTTTGCCATTGAAATCTCTCCAAAACCTTGGCTTAATCGCTTTCAATTTTGCGAGCTCTGTTTCGAGTTGGAAGAAGAAAACGAGTCCAGCTGCAGCGTCGGAGTCGGAGGCAGAGGCAGAGGCGTTTGCGTCGGCTCTGGCGAGCGGGAAGGAAGCGACTTTGTTGGAGTTCTACTCCCCCAAGTGCAGGCTCTGCAATTCCTTGCTCAAATTTGTCTCCGAAGTCGAAACCAGAAACTCTAATTGGCTCAACATTGTTATGGCTGATGCTGAGAACCCCAATTGGCTACCCGAGCTCCTTAATTATGATGTTAGCTATGTTCCTTGCTTTGTGCTTCTTGACAACAATGGAAAGGCCCTGGCAAAGACGGGTGTCCCAAATAGCCGTTTACATGTTATTGCAGGACTCTCCCATCTTCTCAAAATGAAGCGTCCTCAACAAAATAATGGATGA

>Glyma09g03380.3   sequence type=CDS   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGATTCCTAACCCTAACCCTAACCCTAATGCTAAACCCAAGCAACCTGCGTTTTGCTTAAAATGGCCATGGAATGATGCAAACCCTAGCCCTAGCCCTAGCCCCTGCAAGTTTGAGGGTCCTTTGCCATTGAAATCTCTCCAAAACCTTGGCTTAATCGCTTTCAATTTTGCGAGCTCTGTTTCGAGTTGGAAGAAGAAAACGAGTCCAGCTGCAGCGTCGGAGTCGGAGGCAGAGGCAGAGGCGTTTGCGTCGGCTCTGGCGAGCGGGAAGGAAGCGACTTTGTTGGAGTTCTACTCCCCCAAGTGCAGGCTCTGCAATTCCTTGCTCAAATTTGTCTCCGAAGTCGAAACCAGAAACTCTAATTGGCTCAACATTGTTATGGCTGATGCTGAGAACCCCAATTGGCTACCCGAGGTGATATTTTATCTCAATGCCAGTGACACACTAGGTTTTTCCACCACATGCCTAAATCAAGGAAGAGCTTTTGAAACAAACTTGTGCATGCTTGTCATCATTCTGTAA

>Glyma09g03380.4   sequence type=CDS   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGATTCCTAACCCTAACCCTAACCCTAATGCTAAACCCAAGCAACCTGCGTTTTGCTTAAAATGGCCATGGAATGATGCAAACCCTAGCCCTAGCCCTAGCCCCTGCAAGTTTGAGGGTCCTTTGCCATTGAAATCTCTCCAAAACCTTGGCTTAATCGCTTTCAATTTTGCGAGCTCTGTTTCGAGTTGGAAGAAGAAAACGAGTCCAGCTGCAGCGTCGGAGTCGGAGGCAGAGGCAGAGGCGTTTGCGTCGGCTCTGGCGAGCGGGAAGGAAGCGACTTTGTTGGAGTTCTACTCCCCCAAGTGCAGGCTCTGCAATTCCTTGCTCAAATTTGTCTCCGAAGTCGAAACCAGAAACTCTAATTGGCTCAACATTGTTATGGCTGATGCTGAGAACCCCAATTGGCTACCCGAGGTGATATTTTATCTCAATGCCAGTGACACACTAGGTTTTTCCACCACATGCCTAAATCAAGGAAGAGCTTTTGAAACAAACTTGTGCATGCTTGTCATCATTCTGTAA

Predicted protein sequences of Glyma09g03380

Limit To All Plant Sequences

>Glyma09g03380.1   sequence type=predicted peptide   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLIPNPNPNPNAKPKQPAFCLKWPWNDANPSPSPSPCKFEGPLPLKSLQNLGLIAFNFASSVSSWKKKTSPAAASESEAEAEAFASALASGKEATLLEFYSPKCRLCNSLLKFVSEVETRNSNWLNIVMADAENPNWLPELLNYDVSYVPCFVLLDNNGKALAKTGVPNSRLHVIAGLSHLLKMKRPQQNNG*

>Glyma09g03380.3   sequence type=predicted peptide   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLIPNPNPNPNAKPKQPAFCLKWPWNDANPSPSPSPCKFEGPLPLKSLQNLGLIAFNFASSVSSWKKKTSPAAASESEAEAEAFASALASGKEATLLEFYSPKCRLCNSLLKFVSEVETRNSNWLNIVMADAENPNWLPEVIFYLNASDTLGFSTTCLNQGRAFETNLCMLVIIL*

>Glyma09g03380.4   sequence type=predicted peptide   gene model=Glyma09g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLIPNPNPNPNAKPKQPAFCLKWPWNDANPSPSPSPCKFEGPLPLKSLQNLGLIAFNFASSVSSWKKKTSPAAASESEAEAEAFASALASGKEATLLEFYSPKCRLCNSLLKFVSEVETRNSNWLNIVMADAENPNWLPEVIFYLNASDTLGFSTTCLNQGRAFETNLCMLVIIL*

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