SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11720 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 31 protein | chr5:3776840-3780025 FORWARD LENGTH=902 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| KOG1065 | KOG | Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 | JGI | ISS | |
| PTHR22762 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PTHR22762:SF9 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PF01055 | PFAM | Glycosyl hydrolases family 31 | JGI | ISS | |
| UniRef100_G7IMK1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-glucosidase (Fragment) n=1 Tax=Medicago truncatula RepID=G7IMK1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L0I7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0I7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g03250 not represented in the dataset |
Glyma09g03250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g14150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g028000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g03250.1 sequence type=CDS gene model=Glyma09g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATACAACCACCACAATCGCTCCTCTACTCTTCTGTACCTGTGCTTGTCTCATCTTCTTCTCCGCTTCATTGTCAGAAGCAACAGTAGTTGGTTATGGCTACACCATCTCAACTGTCAACAATTATCCCATAAAGAATTCTTTGACTGCAAACCTTAACCTCATCAAATCCTCCTCTGTTTCCGGACCCGACATTCCACACCTCTCCCTCACTGCCAGTTTTGAGAACAAGGATAGGTTGAGAGTAAGAATCACTGACTCCAATCACCAAAGATGGGAAATTCCACAAGAAGTGATTCCAAGAGACTCATCTTCCCAACATTACCCTCTTGGCTTCCTCAATACCAAACAAGGTTCCCATCAGCCAAAAGACTCTCTGAGCCTCACACATTCAGACTCAGACCTTGTTTTCAGTCTCCACAACACCACTCCATTTGGCTTCACAGTCTCTCGCAAATCTTCCAATGATGTCCTCTTCCACGCCGCACCAGACCCTTCCAACCCGGAAACTTTTCTTGTCTTCAAAGACCAGTACCTGCAGCTCTCTTCCTCCCTTCCATCGCAAAGAGCCTCTCTTTACGGCTTCGGGGAACACACCAAGAGCTCCTTCAAGCTGCGACCGAACCAGACCCTTACACTTTGGAATGCAGACATTGCAAGTGCCAACCTAGACTTGAACCTTTATGGCTCTCACCCTTTTTATTTGGACGTCAGATCACACTCCTCTGATGGAAAAGTGAAGGCTGGCACCACACACGGGGTGTTGCTGCTCAACAGCAATGGAATGGACATTGTGTATGGTGGTGATCGAATTACTTATAAAGTCATTGGTGGGGTTTTTGATCTCTACTTTTTCGCTGGATCCTCTCCTGAATTGGTGTTGGAGCAGTACACTCAACTCATTGGAAGGCCTGCTCCCATGCCTTATTGGTCCTTTGGTTTTCATCAGTGTCGATGGGGCTACAAGAATGTTAGTGATCTCGAGGATGTGGTTGCCAACTATGCAAAAGCAGGTATACCCCTTGAAGTTATGTGGACAGATATTGATTACATGGATGCATTTAAAGATTTCACATTAGACCCCATTAACTTTCCGCTGGATAAGATGAGAAGTTTTGTTGATACTCTTCACAAGAATGGTCAGAAATACGTGCTTATATTGGATCCAGGTATCAGTGTAAATGAGACATATGCAACCTATGATAGAGGTTTGAAGGCTGATGTCTATATAAAGAGGAATGGAAACAATTATCTTGGTCAAGTTTGGCCCGGACCAGTTTATTATCCTGATTTTCTAAACCCTCGCAGCCAAGCATTTTGGGGTGGGGAAATCAAATTATTTAGGGACCTTCTCCCTATTGATGGTATTTGGCTTGACATGAATGAGTTATCTAATTTCATTACTTCTCCTCCCATTCCATCTTCAAATCTTGATAATCCTCCTTATAAAGTTAACAATGTTGGAGATCAACGACCCATTAATGACAAAACTGTTCCAGCAACATCTTTACACTTTGGTAATATCACTGAGTATAATGTCCACAATTTGTATGGACTACTAGAATCCAAAGTAACTAACAAAGCATTAAAGGATATAACTGGTAAAAGGCCATTCATCCTAAGTAGATCAACCTTTGTGAGTTCTGGTAAGTATGCTGCCCACTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCAATCCCTGCGATATTAAATTCTGGAATCTTTGGAATTCCAATGGTTGGAGCAGATATATGTGGTTTCGAAGGAAATACAACTGAAGAACTTTGCGGGCGTTGGATCCAGTTGGGGGCTTTTTACCCCTTTGCAAGAGATCATTCAGTAATAAACTCCATCCGGCAAGAGCTTTACGTTTGGGATTCAGTGGCTTCATCAGCTAGGAAAGTGCTTGGCCTACGCTATCGTCTTCTCCCTTATTTCTACACACTAATGTATGAAGCACATACAAAAGGGACTCCCATTGCAAGACCCCTTTTCTTTTCTTTCCCCGAGGATGTCACCACATATGAAATAAACTCACAGTTTCTATTAGGTAGAGGAGTTCTGGTGTCACCTGTGCTACAATCCGGGGCAACCACTGTTGATGCATACTTTCCTAAAGGAACTTGGTTTGATCTCTTCAATGTCTCAAATTCAGTGAATGCAGAATCAGGCAAGTATGTCACTCTTGATGCTCCATATGATCACATAAATGTGCATGTTGGGGAAGGTAATATTTTGGCCTTGCAAGGAGAAGCAATGACAACTGATGCTGCGCGGAAAACTGCATTTCAACTTGTGGTGGTTATCAGTAGCAGCAGAAGTAGTTATGGACAATTGTACTTGGATGATGGGGAGGCACTTGATATGGCAGGGGCGAAAGATCAGTGGACACTGGTAAGCTTTTATGGCGCGTTACACAACAATAGCGTTTCTGTAACATCTAAGGTCACTAATGGAAGGTTTGCTCTGGACCAAAGGTGGATCTTAGACAAGGTGACTTTCTTGAGGATACCTAAGCTAGCAGGGAATGAGTTGAGTATTTACTGTTGGTTGCTCATAATTTATGCTATCAAATTAGCAGTTACCTTCATTTTCGGTTCCTTGAGGTCCTACCTTTGTAAGTTACAACATAACTCTTCACACTCTATCCTTAGTAGCATGCAGGCTAGCAATGCAGTATTCACAAAACCTTATGGGTTCATAATATCATATTCACTAGAGCATCCTAGGATGACTGTATTTTTTCCAAGTAAAAATTATATAAGAATATCTTACGCCAGGAATATCAGTTGA
>Glyma09g03250.1 sequence type=predicted peptide gene model=Glyma09g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTTTTIAPLLFCTCACLIFFSASLSEATVVGYGYTISTVNNYPIKNSLTANLNLIKSSSVSGPDIPHLSLTASFENKDRLRVRITDSNHQRWEIPQEVIPRDSSSQHYPLGFLNTKQGSHQPKDSLSLTHSDSDLVFSLHNTTPFGFTVSRKSSNDVLFHAAPDPSNPETFLVFKDQYLQLSSSLPSQRASLYGFGEHTKSSFKLRPNQTLTLWNADIASANLDLNLYGSHPFYLDVRSHSSDGKVKAGTTHGVLLLNSNGMDIVYGGDRITYKVIGGVFDLYFFAGSSPELVLEQYTQLIGRPAPMPYWSFGFHQCRWGYKNVSDLEDVVANYAKAGIPLEVMWTDIDYMDAFKDFTLDPINFPLDKMRSFVDTLHKNGQKYVLILDPGISVNETYATYDRGLKADVYIKRNGNNYLGQVWPGPVYYPDFLNPRSQAFWGGEIKLFRDLLPIDGIWLDMNELSNFITSPPIPSSNLDNPPYKVNNVGDQRPINDKTVPATSLHFGNITEYNVHNLYGLLESKVTNKALKDITGKRPFILSRSTFVSSGKYAAHWTGDNAATWNDLAYSIPAILNSGIFGIPMVGADICGFEGNTTEELCGRWIQLGAFYPFARDHSVINSIRQELYVWDSVASSARKVLGLRYRLLPYFYTLMYEAHTKGTPIARPLFFSFPEDVTTYEINSQFLLGRGVLVSPVLQSGATTVDAYFPKGTWFDLFNVSNSVNAESGKYVTLDAPYDHINVHVGEGNILALQGEAMTTDAARKTAFQLVVVISSSRSSYGQLYLDDGEALDMAGAKDQWTLVSFYGALHNNSVSVTSKVTNGRFALDQRWILDKVTFLRIPKLAGNELSIYCWLLIIYAIKLAVTFIFGSLRSYLCKLQHNSSHSILSSMQASNAVFTKPYGFIISYSLEHPRMTVFFPSKNYIRISYARNIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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