Glyma09g03020 - SoyBase

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Report for Sequence Feature Glyma09g03020

Feature Type:	gene_model
Chromosome:	Gm09
Start:	2112564
stop:	2115728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g03020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23860	AT	Annotation by Michelle Graham. TAIR10: tubulin beta 8 \| chr5:8042962-8044528 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0045298	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tubulin complex	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1375	KOG	Beta tubulin	JGI		ISS
PTHR11588	Panther	TUBULIN	JGI		ISS
PF00091	PFAM	Tubulin/FtsZ family, GTPase domain	JGI		ISS
PF03953	PFAM	Tubulin C-terminal domain	JGI		ISS
UniRef100_I1MG61	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MG61_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q40665	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tubulin beta-3 chain n=4 Tax=Oryza sativa RepID=TBB3_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g03020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g03020 not represented in the dataset	Glyma09g03020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g03020

Paralog	Evidence	Comments
Glyma15g13970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g03020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g026100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g03020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g03020

Limit To All Plant Sequences

>Glyma09g03020.1   sequence type=CDS   gene model=Glyma09g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAAATCTTGCACATCCAGGGAGGGCAATGCGGGAACCAGATCGGAGCGAAGTTCTGGGAGGTGATATGCGACGAGCACGGCATCGACCACACCGGAAAGTACAGTGGCGACTCTGAACTCCAATTGGAACGCATCAATGTTTATTACAACGAAGCGAGTGGCGGAAGGTACGTTCCACGCGCCGTCCTCATGGATCTAGAGCCCGGCACCATGGACTCCGTCAGATCCGGCCCCTACGGCCAGATCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGCGCCGGAAACAACTGGGCCAAAGGTCACTACACCGAAGGCGCTGAGCTCATTGACTCCGTTCTCGACGTCGTTCGCAAAGAAGCCGAGAATTGCGACTGCTTGCAAGGGTTTCAAGTGTGCCATTCTCTTGGTGGAGGAACGGGTTCTGGCATGGGGACGCTTCTGATCTCCAAGATTCGGGAGGAGTATCCGGATCGGATGATGTTGACTTTTTCCGTGTTTCCTTCGCCTAAGGTTTCGGATACCGTTGTGGAGCCTTACAACGCTACCCTCTCTGTTCACCAGCTTGTTGAGAATGCTGATGAGTGTATGGTTTTGGACAATGAGGCTCTCTATGACATCTGTTTCAGGACTTTGAAGCTCGCCACGCCGACATTTGGTGACCTTAACCACCTGATATCTGCCACCATGAGTGGAGTTACTTGTTGTCTACGTTTCCCTGGGCAATTGAACTCTGATCTTCGCAAGCTTGCTGTCAATCTTATCCCATTCCCTCGGCTCCATTTCTTCATGGTTGGGTTTGCGCCCTTGACATCAAGAGGATCCCAGCAATACCGTGCTTTGACTGTTCCTGAATTGACTCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCTGCTGACCCTCGTCACGGTCGTTATTTGACTGCTTCAGCTATGTTCCGTGGTAAGATGAGCACAAAAGAGGTGGATGAACAGATGATCAATGTGCAAAACAAGAACTCTTCATACTTTGTCGAATGGATACCTAATAATGTGAAGTCCAGCGTGTGTGATATCCCACCTAAGGGTCTTAAAATGGCATCCACTTTCATTGGTAACTCGACTTCAATCCAGGAGATGTTCAGGAGAGTTAGTGAGCAGTTCACGGCTATGTTCAGGCGCAAGGCTTTCTTGCACTGGTACACCGGGGAAGGAATGGATGAAATGGAATTCACCGAGGCCGAGAGTAACATGAACGATCTTGTTGCTGAGTATCAGCAGTACCAGGATGCTACTGCTGACGAGGACGAGTATGAGGAGGAGGAAGAGGAAGAAGAGATTGCTGCTTAA

Predicted protein sequences of Glyma09g03020

Limit To All Plant Sequences

>Glyma09g03020.1   sequence type=predicted peptide   gene model=Glyma09g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEYEEEEEEEEIAA*

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