SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24160 | AT | Annotation by Michelle Graham. TAIR10: putative type 1 membrane protein | chr3:8726241-8729023 FORWARD LENGTH=364 | SoyBase | E_val: 3.00E-95 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9RWJ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PMP, putative n=1 Tax=Ricinus communis RepID=B9RWJ6_RICCO | SoyBase | E_val: 2.00E-127 | ISS |
| UniRef100_C6T924 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T924_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g02980 not represented in the dataset |
Glyma09g02980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g13940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g025700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g02980.2 sequence type=transcript gene model=Glyma09g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTGAGTGCGATTTACGTTTCATTATTGCGAGAAATAACGAAGCACGTTGCTGAAGTGGAACCTCTGGATCTCTCTCTCTCTGCGATGGAGTTTCGCGTTTCCGTCATTTGGAGCCTTCTCCTCATTGTCTCTTTCTTCTCTCCTCAAATCAAGGGTGAGGCTTCTGGTTCCGTCTTCTTCGTCGATAGCTCCAGTAATCAATTCATTCGCGCCAGATCATCCAACTATGAGCAACCTTCACTGTTGCTAGAAGAAGCTGGTGCTGTTGTGTCAGTCTTGCTTGGTTTTGCTCCTCCTTCCACCCTTCCAGCTGCCAGCTCATCCAAGTTGAATGATGTTCTGATTCCTAACCCATTCAAGAGGCCTCGTGCTGTGTTTTTGCTGGAAGTGAATGGAATCAATGGTCTTGGAAATATTGTCCAGGATAATCCAATGTTCAGCAATTCATTTTGGAGTACAAATTCAGATAAAGTTGACATTCAACTTCCAGATGAAAATGATGTTTCTGTGGTTTCTTTGGATGAGCAACTGGAAGACTGGACTGACAAAGAAATTAGTGATTTTTCATCTTCGATAGGTGGATCATATGCTCCTGATGCCCTTGAGCCATTAAATGGAGTGCTTACCATTCCATTGGCAAATGGTGCCTCAGTGAATCTTCATATGTCAAAGAAAGCAGAAAGGAAGTTCATCATAGGTCTTATGTCTCTCACACGTAATGTCCAAAGAGCAATTCAAATGCATGACAATTTATCACAGAGTGCAAAGAGTCCTGCTGAGTTGTTAACAGGATGCTTCAATGGCATTAAGGTTTTGCAAGAGCAATATGAAACTGGAAGTATTGCTCAGCATGGAGTTGAATTGCTATATGCAACTTTGACAAAGATATTTAGTTCACTGCAAGAAGCATATAAAGGTCAAATTGTTGGAATTATCTACTGTCACGTGGCCACTACTCAAGAGTCGGGCAAGAAGTTTGATGTGATATTTACTCCTCACCATCCGTATGCTCGATGGTTGGCAGAAACAAATGCAGTGAATGCAACATTGCCAGAAGTGGTGCTGGTTAGGAGAACCCTTGCTTGGATAACAGGAATTATATTGCTCGTTTCAACCCTTATGGGGGTAAGTATTAGATATGCTACCTCCTGAATATGCCGCTCACAAGGGACACCCTTCTATATTCTAATGTCAAGCTTGATTAAGCATGGATGCGCACCAAGACAAATCTTTTCAACCAACGAAGGAGAACCGGTCTGCCGCTGAAGCTTGTAATTGGGGGAGTCTTTTTCTTGATGCCTCTAATCCGTGTGCATGATTATATTATTGTTATAGCTTTTGTTACTTGTGTTTAATGGACCGGTGTAGCCAATTATATTCATATAATGAGGTATTGGAAACTAGTCCAATCAGGATTTGAGTCTAGAGAATAGGGGATTATTGTGTACCGATGTTGCTTAAATGTGAAGCATTGTTCCCCCGTGTTTAATCAGGACGTAGATGGTCATAGTAGGTGTGTTATTATTCCAGCCATTTACCATAATGGGTGTACCCCGTGGTTATCATTTTGATCGAAATTATTTCAATTCTATTGTAAAATAATGATCATTTCTGTTTCTAAATAATGAGCAGAGCATTGTTTTCATACAACACGAGCTCACCATTTATTGGCATTGTGCTTCTCTTCCCCATGATTGTTGAT
>Glyma09g02980.1 sequence type=CDS gene model=Glyma09g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTCGCGTTTCCGTCATTTGGAGCCTTCTCCTCATTGTCTCTTTCTTCTCTCCTCAAATCAAGGGTGAGGCTTCTGGTTCCGTCTTCTTCGTCGATAGCTCCAGTAATCAATTCATTCGCGCCAGATCATCCAACTATGAGCAACCTTCACTGTTGCTAGAAGAAGCTGGTGCTGTTGTGTCAGTCTTGCTTGGTTTTGCTCCTCCTTCCACCCTTCCAGCTGCCAGCTCATCCAAGTTGAATGATGTTCTGATTCCTAACCCATTCAAGAGGCCTCGTGCTGTGTTTTTGCTGGAAGTGAATGGAATCAATGGTCTTGGAAATATTGTCCAGGATAATCCAATGTTCAGCAATTCATTTTGGAGTACAAATTCAGATAAAGTTGACATTCAACTTCCAGATGAAAATGATGTTTCTGTGGTTTCTTTGGATGAGCAACTGGAAGACTGGACTGACAAAGAAATTAGTGATTTTTCATCTTCGATAGGTGGATCATATGCTCCTGATGCCCTTGAGCCATTAAATGGAGTGCTTACCATTCCATTGGCAAATGGTGCCTCAGTGAATCTTCATATGTCAAAGAAAGCAGAAAGGAAGTTCATCATAGGTCTTATGTCTCTCACACGTAATGTCCAAAGAGCAATTCAAATGCATGACAATTTATCACAGAGTGCAAAGAGTCCTGCTGAGTTGTTAACAGGATGCTTCAATGGCATTAAGGTTTTGCAAGAGCAATATGAAACTGGAAGTATTGCTCAGCATGGAGTTGAATTGCTATATGCAACTTTGACAAAGATATTTAGTTCACTGCAAGAAGCATATAAAGGTCAAATTGTTGGAATTATCTACTGTCACGTGGCCACTACTCAAGAGTCGGGCAAGAAGTTTGATGTGATATTTACTCCTCACCATCCGTATGCTCGATGGTTGGCAGAAACAAATGCAGTGAATGCAACATTGCCAGAAGTGGTGCTGGTTAGGAGAACCCTTGCTTGGATAACAGGAATTATATTGCTCGTTTCAACCCTTATGGGGATATGCTACCTCCTGAATATGCCGCTCACAAGGGACACCCTTCTATATTCTAATGTCAAGCTTGATTAA >Glyma09g02980.2 sequence type=CDS gene model=Glyma09g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTCGCGTTTCCGTCATTTGGAGCCTTCTCCTCATTGTCTCTTTCTTCTCTCCTCAAATCAAGGGTGAGGCTTCTGGTTCCGTCTTCTTCGTCGATAGCTCCAGTAATCAATTCATTCGCGCCAGATCATCCAACTATGAGCAACCTTCACTGTTGCTAGAAGAAGCTGGTGCTGTTGTGTCAGTCTTGCTTGGTTTTGCTCCTCCTTCCACCCTTCCAGCTGCCAGCTCATCCAAGTTGAATGATGTTCTGATTCCTAACCCATTCAAGAGGCCTCGTGCTGTGTTTTTGCTGGAAGTGAATGGAATCAATGGTCTTGGAAATATTGTCCAGGATAATCCAATGTTCAGCAATTCATTTTGGAGTACAAATTCAGATAAAGTTGACATTCAACTTCCAGATGAAAATGATGTTTCTGTGGTTTCTTTGGATGAGCAACTGGAAGACTGGACTGACAAAGAAATTAGTGATTTTTCATCTTCGATAGGTGGATCATATGCTCCTGATGCCCTTGAGCCATTAAATGGAGTGCTTACCATTCCATTGGCAAATGGTGCCTCAGTGAATCTTCATATGTCAAAGAAAGCAGAAAGGAAGTTCATCATAGGTCTTATGTCTCTCACACGTAATGTCCAAAGAGCAATTCAAATGCATGACAATTTATCACAGAGTGCAAAGAGTCCTGCTGAGTTGTTAACAGGATGCTTCAATGGCATTAAGGTTTTGCAAGAGCAATATGAAACTGGAAGTATTGCTCAGCATGGAGTTGAATTGCTATATGCAACTTTGACAAAGATATTTAGTTCACTGCAAGAAGCATATAAAGGTCAAATTGTTGGAATTATCTACTGTCACGTGGCCACTACTCAAGAGTCGGGCAAGAAGTTTGATGTGATATTTACTCCTCACCATCCGTATGCTCGATGGTTGGCAGAAACAAATGCAGTGAATGCAACATTGCCAGAAGTGGTGCTGGTTAGGAGAACCCTTGCTTGGATAACAGGAATTATATTGCTCGTTTCAACCCTTATGGGGGTAAGTATTAGATATGCTACCTCCTGA
>Glyma09g02980.1 sequence type=predicted peptide gene model=Glyma09g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFRVSVIWSLLLIVSFFSPQIKGEASGSVFFVDSSSNQFIRARSSNYEQPSLLLEEAGAVVSVLLGFAPPSTLPAASSSKLNDVLIPNPFKRPRAVFLLEVNGINGLGNIVQDNPMFSNSFWSTNSDKVDIQLPDENDVSVVSLDEQLEDWTDKEISDFSSSIGGSYAPDALEPLNGVLTIPLANGASVNLHMSKKAERKFIIGLMSLTRNVQRAIQMHDNLSQSAKSPAELLTGCFNGIKVLQEQYETGSIAQHGVELLYATLTKIFSSLQEAYKGQIVGIIYCHVATTQESGKKFDVIFTPHHPYARWLAETNAVNATLPEVVLVRRTLAWITGIILLVSTLMGICYLLNMPLTRDTLLYSNVKLD* >Glyma09g02980.2 sequence type=predicted peptide gene model=Glyma09g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFRVSVIWSLLLIVSFFSPQIKGEASGSVFFVDSSSNQFIRARSSNYEQPSLLLEEAGAVVSVLLGFAPPSTLPAASSSKLNDVLIPNPFKRPRAVFLLEVNGINGLGNIVQDNPMFSNSFWSTNSDKVDIQLPDENDVSVVSLDEQLEDWTDKEISDFSSSIGGSYAPDALEPLNGVLTIPLANGASVNLHMSKKAERKFIIGLMSLTRNVQRAIQMHDNLSQSAKSPAELLTGCFNGIKVLQEQYETGSIAQHGVELLYATLTKIFSSLQEAYKGQIVGIIYCHVATTQESGKKFDVIFTPHHPYARWLAETNAVNATLPEVVLVRRTLAWITGIILLVSTLMGVSIRYATS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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