SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20930 | AT | Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein | chr4:11198627-11201036 REVERSE LENGTH=347 | SoyBase | E_val: 1.00E-168 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: valine metabolic process | SoyBase | N/A | ISS |
| GO:0006574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: valine catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity | SoyBase | N/A | ISS |
| GO:0008442 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0409 | KOG | Predicted dehydrogenase | JGI | ISS | |
| PTHR22981 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22981:SF7 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE | JGI | ISS | |
| PF03446 | PFAM | NAD binding domain of 6-phosphogluconate dehydrogenase | JGI | ISS | |
| UniRef100_B9SB22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxyisobutyrate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SB22_RICCO | SoyBase | E_val: 3.00E-169 | ISS |
| UniRef100_I1L0F6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0F6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma09g02900 not represented in the dataset |
Glyma09g02900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g13865 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g025100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g02900.2 sequence type=transcript gene model=Glyma09g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGATTTTCATACATTTCTTAGTAAGAAAAAAGTGTTCTTAGCACTTCTATTTATTACTTAGTACAGGATTTTAATTTTAACGTTAAAAATGAGACAAAATTTACATGTGAATCTGGACAAGTCCATGCTGACAAGAAGTTTGCCTCGTACTTCTTAAATTAACGTTTTTTTTTAAGCACGTGGTTGTTTGGTCCCATCGTGAAATTTCATGTCGTGTCTCATTTTATTGTTGTAGTGAGAAATAGGAAAGGATATTTATCTATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAAATTAAGACGTTGGTTGTATGCATAAAACTGTTGTGATCCCATGCCTAGTATATATGGCAAGAAGATCAATTGAGCTCAATGAAGTTGTAGAAACAGTTGCGAGTTATTCTTGTTTTCAATCAGAAATAGTGTGGTTCCGCAAGACGAGCAAATATCAAAACACAAATTCTAAACGAGTAA
>Glyma09g02900.1 sequence type=CDS gene model=Glyma09g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGGTTCCCCCTAATCACTTGCGGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAA >Glyma09g02900.2 sequence type=CDS gene model=Glyma09g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAA
>Glyma09g02900.1 sequence type=predicted peptide gene model=Glyma09g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAICKLKSLLSLSKCNSALVSSSIRAFSSAQVPPNHLRNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDEPHDQ* >Glyma09g02900.2 sequence type=predicted peptide gene model=Glyma09g02900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAICKLKSLLSLSKCNSALVSSSIRAFSSAQNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDEPHDQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
