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Report for Sequence Feature Glyma09g02830

Feature Type:gene_model
Chromosome:Gm09
Start:1941920
stop:1947818
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g02830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21160AT Annotation by Michelle Graham. TAIR10: Calcium-dependent ARF-type GTPase activating protein family | chr4:11284694-11286532 FORWARD LENGTH=337 SoyBaseE_val: 0ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006605GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016197GO-bp Annotation by Michelle Graham. GO Biological Process: endosomal transport SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI ISS
PTHR23180Panther CENTAURIN/ARF JGI ISS
PTHR23180:SF24Panther CENTAURIN/ARF-RELATED JGI ISS
PF00168PFAM C2 domain JGI ISS
PF01412PFAM Putative GTPase activating protein for Arf JGI ISS
UniRef100_G7IKU9UniRef Annotation by Michelle Graham. Most informative UniRef hit: ZAC n=2 Tax=Medicago truncatula RepID=G7IKU9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0001B642BCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B642BC related cluster n=1 Tax=unknown RepID=UPI0001B642BC SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g02830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g02830
ParalogEvidenceComments
Glyma15g13700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g02830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g024400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g02830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g02830
>Glyma09g02830.1   sequence type=CDS   gene model=Glyma09g02830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTTGCAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCATCAGAGTGGTAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTGTTGTCTGTGACATTGGATGATTGGTCAGAGGATGAAATAGATGCAATGATCGAAGTTGGGGGAAATGTTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCCAAAAGTAGTTTTATGGACAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCTGAGCATTATGGACAGATAAAATTGAAAGTATTTGACCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGTGATATGCAGATAGGAAAATGGTTAAAATCGGATGACAATGCCCTTATTGAGGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAAATGATGTCACTCAAGCTCCAGGATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGAGCAATAG
Predicted protein sequences of Glyma09g02830
>Glyma09g02830.1   sequence type=predicted peptide   gene model=Glyma09g02830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELARPASSRRKLKDLLHQSGNRLCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMIEVGGNVSANSIYEAYIPEGYTKPGPDAGHEQRSKFIRSKYELQEFLKPSLRIVSGKSSLQSSSAKSSFMDSFKSTSSSQRMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLSLGQQTVQTTIIRSNLNPVWNEEYMLSVPEHYGQIKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIVDGKVKQMMSLKLQDVESGELDLELEWIPLEQ*






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