Glyma09g02770 - SoyBase

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Report for Sequence Feature Glyma09g02770

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1920949
stop:	1926656
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g02770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30500	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A7 \| chr1:10804736-10805896 REVERSE LENGTH=190	SoyBase	E_val: 2.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016602	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12632	Panther	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	JGI		ISS
PTHR12632:SF5	Panther	TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED	JGI		ISS
PF02045	PFAM	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	JGI		ISS
UniRef100_G7IKU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A-7 n=1 Tax=Medicago truncatula RepID=G7IKU2_MEDTR	SoyBase	E_val: 5.00E-105	ISS
UniRef100_I1L0E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L0E6_SOYBN	SoyBase	E_val: 5.00E-149	ISS

Expression Patterns of Glyma09g02770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g02770

Paralog	Evidence	Comments
Glyma15g13660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g02770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g023800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g02770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g02770

Limit To All Plant Sequences

>Glyma09g02770.2   sequence type=transcript   gene model=Glyma09g02770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAAGTTTGCCTTTATTTGTGTGGGTGGGTGTGGTGTGGATAGGTGGCAGCTACGACACAACACAACACAACACAACACAACACAGTCCTAAGTTGTAAGAAACACTCTCTTCTCCTTTCTCACTATTGTTCTGTTACTGTTTTTTGCAGCAACACTTCAGTTCAATTAACGAACTACACCACTTTCTTTCTCTTCTTCGACTGCTCTGTAACCGAAAACCTCCCTTTCCCAGTTTCGAATCTTTTGTTTCTGCCTTTGGTTACTGTTTTTCCGAGCCATGCTATTCATTATTGTCCTTCGAATCGGATTGGTAACAAGGAATTTATGTGTGTAGATTGGGACACTGTATTGCATGTAAATCAGGAAATCATGACTTCTACTCATGACCTCTCAGATAATGAAGCTGATGACCAGCAGCAGTCGGAATCACAAATGGAGCCTTTATCTGCAAATGGAATTTCTTATGCAGGTATTGCTACTCAGAATGTTCAGTATGCAACACCTTCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCACTATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAAAACTACAGAAATGGTGATGCTGTAGATTGCAGGGATCTGTTGTGTATATCTATATTGGGAGATGAATCTCCAACCAACAGTATCCTCAGATATCTCCCTATTATTCATTCTGTCGTACAACGCCATAGGTATAAGTATAGGTTGTGTAGTAGGTATGTTAGGAGGTTGCAAAATAAAACAAGTAAAATGTAAATTGAAGTGATTCAACTAAGTCTATCCCCAATGTGGTCCTTTCTTGCCTTTTTAGGTATTTTTATTGTGTGGGCTTTTCTTTGTATTATTTGGTGCCTCTGAGGGAAAGAGAAGAGATTATCCGAATGCGTGATGGTTTGGTTGGATCATGTTTATTTAGCTTGTGAGAATTAATTGTTGTAGCACTCTTTTGATTTGTTGTTATAAACGAGGATGAAAAGTTTAAACCAGGATTGGTCAAGTTCCGCACAGTTGCAGATAGAAGGAAGAGGTTCACATTTCATGAAGTATAATGAATGGATC

Coding sequences of Glyma09g02770

Limit To All Plant Sequences

>Glyma09g02770.1   sequence type=CDS   gene model=Glyma09g02770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTACTCATGACCTCTCAGATAATGAAGCTGATGACCAGCAGCAGTCGGAATCACAAATGGAGCCTTTATCTGCAAATGGAATTTCTTATGCAGGTATTGCTACTCAGAATGTTCAGTATGCAACACCTTCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCACTATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA

>Glyma09g02770.2   sequence type=CDS   gene model=Glyma09g02770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGTAGATTGGGACACTGTATTGCATGTAAATCAGGAAATCATGACTTCTACTCATGACCTCTCAGATAATGAAGCTGATGACCAGCAGCAGTCGGAATCACAAATGGAGCCTTTATCTGCAAATGGAATTTCTTATGCAGGTATTGCTACTCAGAATGTTCAGTATGCAACACCTTCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCACTATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA

Predicted protein sequences of Glyma09g02770

Limit To All Plant Sequences

>Glyma09g02770.1   sequence type=predicted peptide   gene model=Glyma09g02770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSTHDLSDNEADDQQQSESQMEPLSANGISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS*

>Glyma09g02770.2   sequence type=predicted peptide   gene model=Glyma09g02770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCVDWDTVLHVNQEIMTSTHDLSDNEADDQQQSESQMEPLSANGISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS*

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