SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30460 | AT | Annotation by Michelle Graham. TAIR10: cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631 | SoyBase | E_val: 0 | ISS |
| GO:0006378 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA polyadenylation | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:1900363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mRNA polyadenylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005847 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mRNA cleavage and polyadenylation specificity factor complex | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| KOG1902 | KOG | Putative signal transduction protein involved in RNA splicing | JGI | ISS | |
| PTHR12357 | Panther | YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING | JGI | ISS | |
| PTHR12357:SF3 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04146 | PFAM | YT521-B-like family | JGI | ISS | |
| UniRef100_A9LNK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cleavage and polyadenylation specificity factor CPSF30 n=1 Tax=Arabidopsis thaliana RepID=CPSF_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337E97 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E97 related cluster n=1 Tax=unknown RepID=UPI0002337E97 | SoyBase | E_val: 0 | ISS |
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Glyma09g02570 not represented in the dataset |
Glyma09g02570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g13480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g022200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g02570.1 sequence type=CDS gene model=Glyma09g02570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCCCCCTCCTCCGCCGCCGCCGCCCCCTCCGGCCCCCTCATCCCGCACGACTCCTCCGCGGCCGCCTCCGCGGTGTCTAACGGAGGCCCCGCCGCCCCCGCCCCGTCCGCGGTTGACCCCGTGGGCGGCGGCAACGTCCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGTGACGCGTGCGGGTTCCTGCATCAGTACGACAAGGCAAGGATGCCGGTGTGCCGCTTCTTCAGGCTCTACGGAGAATGCCGGGAACAGGATTGCGTCTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGGTTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAGGAGGTCCTTCAAAAGATCCAACATTTATATTCCTACAATTATAACTCATCCAACAAGTTTTTCCAACAAAGAGGTGCTAGTTATAATCAACAAGCTGAAAAACCCCTGCTTCCTCAAGGAAATAATTCTACAAACCAAGGGGTGACTGGAAACCCATTACCAGCAGAGTTAGGAAATGCCCAGCCACAGCAACAAGTTCAGCAGTCTCAGCAGCAGGTCAACCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCTAATCAAGCAAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTTTGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTAATATTAATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAAAATTGGTGGTTCTGTTGCTGGGGGGAATTGGAAATATGCTCATGGAACTGCACATTATGGACGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGAGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCTATCTCGGTTGCAGCAGAGTCGAAACGTGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTACCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAGAGCGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTTGGGCCAGCTGGCCAAGGCAGAGGTAGGGGACGAGGTATGATGTGGCCGCCTCATATGCCTCTCGGGCGTGGAGCCCGGCCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCGTATGGGCCTGTTGGCCCTGATGGCTTTGGTATGCCAGATCTTTTCGGTGTGGGACCCCGTGGTTTTGCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGTCCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCTCAACCCGGGATGTTTCCAGGTGGTGGGTTTGGAATGATGTTGAATCCTGGACGCGGTCCTTTCATGGGTGGGATTGGGGTTGGAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCACTACCTCAGAATGCAAACCGTGCTGCCAAAAGAGATCAAAGAACTGCTGATCGGAATGATAGGTTTGGTTCAGGATCTGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGCGGACCTGACGATGACCCGCAGTATCAGCAAGGATACAAAGGGAACCAGGATGATCATCCTGATGATAGTGAAAGTGAGGACGAGGCACCTAGGAGGTCAAGACATGGAGAGGGGAAAAAGAAACACAAAATATAG
>Glyma09g02570.1 sequence type=predicted peptide gene model=Glyma09g02570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSEGVLSFDFEGGLDAAPSSAAAAPSGPLIPHDSSAAASAVSNGGPAAPAPSAVDPVGGGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGASYNQQAEKPLLPQGNNSTNQGVTGNPLPAELGNAQPQQQVQQSQQQVNQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMLNPGRGPFMGGIGVGGANPPRGGRPVNMPPMFPPPPPLPQNANRAAKRDQRTADRNDRFGSGSEQGKSQDMLSQSGGPDDDPQYQQGYKGNQDDHPDDSESEDEAPRRSRHGEGKKKHKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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