Glyma09g02430 - SoyBase

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Report for Sequence Feature Glyma09g02430

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1622058
stop:	1627689
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g02430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45110	AT	Annotation by Michelle Graham. TAIR10: NPR1-like protein 3 \| chr5:18229319-18231334 FORWARD LENGTH=586	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0080185	GO-bp	Annotation by Michelle Graham. GO Biological Process: effector dependent induction by symbiont of host immune response	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:1901149	GO-mf	Annotation by Michelle Graham. GO Molecular Function: salicylic acid binding	SoyBase	N/A	ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF11900	PFAM	Domain of unknown function (DUF3420)	JGI		ISS
PF12313	PFAM	NPR1/NIM1 like defence protein C terminal	JGI		ISS
UniRef100_B8XQT5	UniRef	Annotation by Michelle Graham. Best UniRef hit: NPR1-1 protein n=1 Tax=Glycine max RepID=B8XQT5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B8XQT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NPR1-1 protein n=1 Tax=Glycine max RepID=B8XQT5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma09g02430

Locus	Gene Symbol	Protein Name
	NPR1-2	nonexpressor of PR1

Expression Patterns of Glyma09g02430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g02430 not represented in the dataset	Glyma09g02430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g02430

Paralog	Evidence	Comments
Glyma15g13320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g02430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g020800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g02430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g02430

Limit To All Plant Sequences

>Glyma09g02430.1   sequence type=CDS   gene model=Glyma09g02430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTATTCAGCCGAACCCTCATCATCTTTGAGCTTTACCTCATCTTCCCATCTATCTAATGGGTCGGTTAGTCACAACATATGCCCTTCTTATGGCTCTGATCCTGGACCTAACTTAGAGGCTATCAGTTTGAGTAAGCTTAGCTCCAATTTGGAGCAGCTTTTGATTGAACCTGATTGCGATTATAGTGATGCTGACCTTGTTGTCGAGGGAATTCCGGTTAGTGTTCATCGATGTATTCTGGCCTCTAGGAGTAAGTTTTTCCATGAATTATTCAAGAGGGAGAAGGGGTCATCAGAAAAAGAAGGGAAATTGAAGTATAACATGAATGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTTGGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACTTGTGTTGACAATGTTTGTGCTCATGATGCGTGTAGACCTGCCATTAACTTTGCTGTTGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGAGACGTCTACTTAACTTTATAGGAAAGGCCCTTGTGGAAGATGTCATCCCAATCCTCACTGTTGCTTTCCATTGTCAATCAAATCAACTTGTCAATCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACCAAGAGCTTCCGCATGAACTCTCACAAAAAGTTAAATTGCTCCGCCGCAAACCTCAGCAAGATGTTGAAAATGATGCTTCTGTAGTGGATGCTTTGTCTCTAAAAAGAATCACTAGAATACACAAGGCGTTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTGAATGAATCAGACATTACTTTGGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGGACTGGCTAATGTCAATCTTCGAAATTCTAGGGGGTACACAGTGCTTCACATTGCTGCCATGCGTAAAGAGCCTTCCATTATAGTATCCCTACTTACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAGCAGGGGAAAGAAACAAACAAAGATCGGATATGCATCGATGTTCTTGAAAGAGAAATGAGGAGGAATCCAATGGCTGGGGATGCCTGTATGTCTTCCCATACCATGGCTGATGATCTCCACATGAAACTACTGTACCTTGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCTGGTCTTTCTGCGTCAAACTCAAAAGGTTCAAATGGAAACTTAAGGGAGGTTGATCTCAATGAGACTCCTATAGTGCAAAATAAAAGACTTCTTTCTAGAATGGAAGCCCTTACGAAAACAGTGGAGATGGGGCGGCGCTACTTCCCACATTGCTCGGAAGTGCTGGACAAGTTCATGGAGGATGACCTGCCTGACTTGTTTTACCTTGAAAAGGGTACTCATGAAGAGCAGAGAATCAAAAGGACGCGTTTCATGGAGCTTAAAGATGACGTCCACAAGGCTTTCAACAAGGACAAGGCCGAGTTTAGCCGCTCTGGGATTTCATCTTCATCATCCTCATCATCCCTCAGAGATTCTGTTGTACATTACAAGGCTAGGAAAGTGTAA

Predicted protein sequences of Glyma09g02430

Limit To All Plant Sequences

>Glyma09g02430.1   sequence type=predicted peptide   gene model=Glyma09g02430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYSAEPSSSLSFTSSSHLSNGSVSHNICPSYGSDPGPNLEAISLSKLSSNLEQLLIEPDCDYSDADLVVEGIPVSVHRCILASRSKFFHELFKREKGSSEKEGKLKYNMNDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILTVAFHCQSNQLVNQCIDRVARSDLDQISIDQELPHELSQKVKLLRRKPQQDVENDASVVDALSLKRITRIHKALDSDDVELVKLLLNESDITLDEANALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDACMSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKGSNGNLREVDLNETPIVQNKRLLSRMEALTKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTHEEQRIKRTRFMELKDDVHKAFNKDKAEFSRSGISSSSSSSSLRDSVVHYKARKV*

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