SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50500 | AT | Annotation by Michelle Graham. TAIR10: Membrane trafficking VPS53 family protein | chr1:18708217-18715597 REVERSE LENGTH=828 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006890 | GO-bp | Annotation by Michelle Graham. GO Biological Process: retrograde vesicle-mediated transport, Golgi to ER | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG2180 | KOG | Late Golgi protein sorting complex, subunit Vps53 | JGI | ISS | |
| PTHR12820 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04100 | PFAM | Vps53-like, N-terminal | JGI | ISS | |
| UniRef100_G7IFQ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein-like protein n=1 Tax=Medicago truncatula RepID=G7IFQ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L088 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L088_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g02140 not represented in the dataset |
Glyma09g02140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g13040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g018300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g02140.1 sequence type=CDS gene model=Glyma09g02140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGAGGCGTCTCTCTCCGGCGTGGAGCCGCTGATGCAGAAAATCCAGAACGAGATTCGCACCGTCGATGCCGGAATTCTCGCCGCCGTTCGCCAGCAGAGCAACTCAGGAACTAAGGCGAAGGAGGATCTCGCTGCTGCCACACGTGCCGTCGAGGAACTTATGTATAAGATCCGAGAGATAAAAACTAAAGCTGTGCAGAGTGAAACAATGGTTCAAGAAATATGCCGTGACATTAAGAAACTGGACTTTGCCAAGAAGCATATAACTACCACAATTACTGCACTTCACCGGCTTACAATGCTTGTCTCTGCTGTTGAACAACTTCAAGTCATGGCTTCAAAACGTCAATATAAAGAGGCAGCTGCGCAGCTGGAGGCAGTGAACCAGTTATGTAGTCACTTTGAGGCCTATAGGGATATTCCAAAGATCGTAGAACTAAGAGACAAGTTTAAAAATATCAAACAAATACTCAAGTCACATGTGTTTTCTGATTTTTCTAGCTTAGGTACTGGAAAGGAGACAGAAGAAACTAATTTGCTACAGCAGTTGTCTGATGCCTGCCTGGTTGTTGATGCATTAGAGCCTTCTGTAAGGGAAGAATTGGTAAATAATTTCTGCAATAGGGAGCTTACATCGTATGAGCAAATTTTTGAAGGAGCTGAACTTGCAAAGTTGGATAAAACTGAACGAAGATATGCATGGATTAAGCGCCGAATGAGATCAAATGAAGAAATTTGGAAAATCTTTCCTTCTTCATGGCATGTTTCTTATCGTCTCTGTATCCTATTTTGCAAGAAGACAAGGAAACAACTAGAGGACATTCTTGGTAATCTAAAGGAAAAGCCAGATGTTGGGACCTTATTATTGGCTTTACAAAGAACTTTAGAGTTTGAGGATGAATTAGCTGAGAAATTTGGGGGAGGCACTCAAAACAGAGAGATTGGAAATGAGATTGAAGAAATAGGTAAAGGGACTAATTCTAGTAGTAGTGCCATGGATATCCGGAAGAAGTATGAAAAAAAGCTTGCTGCACATCAAGGAGGTGACAGTGAAGAAAAAGATGGAAGTAAAGATTTGGCAGTGCCTGGAGCTGGGTTCAACTTCCGTGGAATTGTTTCATCTTGCTTTGAACCTCACTTAACAGTATATGTAGAATTGGAAGAGAAGACACTGATGGAAAGTCTGGAGAAACTTGTTCAGGAAGAGACATGGGATATTGAGGAGGGAAGTCAGAGTAATGTTTTATCCAGTAGCATGCAGTTGTTTCTTATAATCAAGAGAAGCTTGAAGAGATGCAGTGCTTTAACAAAGAACCAGACACTTTACAATTTGTTGAAGGTTTTCCAAAGAGTTCTTAAAGCATATGCTACAAAGCTCTTTGCTAGACTCCCAAAGGGGGGCACTGGAATTGTTGCTGCAGCCACAGGCATGGATGGACAAATAAAGACATCTGATAGGGATGAAAGAGTGATCTGTTACATTGTAAATTCAGCTGAATATTGCCACAAAACGGCTGGTGAACTGGCTGAAAGTGTTTCTAAAATAATTGACCCTCAATATTCAGATGGGGTGGATATGTCTGAAGTGCAGGATGAATTCTCGGCCGTTATAACAAAATCATTGGTGACCTTAGTGCATGGCCTGGAAACTAAATTTGACATGGAAATGGCTGCAATGACACGTGTCCCTTGGGGTACTCTTGAGAGTGTTGGTGATCAATCAGAGTATGTTAATGCCATAAATTTGATCCTGACCATTAGCATTCCTGCACTTGGAAGTCTTCTTTCACCTGTCTACTTTCAGTTCTTTCTGGATAAGCTTGCATCATCTCTTGGTCCACGCTTTTATTCTAACATTTTCAAATGCAAGCAAATATCAGAAACTGGAGCTCAACAGATGCTATTAGATACCCAAGCTGTAAAGACGATTCTTCTTGAAGTTCCTTCCCTTGGTAGACAGACATCAGGTGCTGCTAGTTATTCCAAGTTTGTAAGCCGCGAGATGAGCAAAGCCGAGGCCCTTTTAAAGGTTATACTTTCTCCAGTTGATTCTGTAGCAGATACTTACCGTGCATTGCTACCTGAGGGTACACCCATGGAATTTCAACGAATCCTGGAGCTTAAGGGTCTGAAAAAAGCTGACCAACAAAGCATTCTTGATGACTTCAACAAACATGGGCCTGGAATTAAGCAAACTCAGATTGCACCTTCAATTGTGCCAGCAGCTGCTCCAGTAGCTCCTGTGGTACCTAGCCCCTCTGCTATTGGACTCATAGCGTCGCGAGAGGATGTTCTTACTAGGGCTGCTGCACTTGGACGAGGAGCTGCCACCACTGGGTTCAAGCGGTTCCTAGCTCTAACTGAAGCCGCCAAAGACAGGAAAGATGGGCCTTTCAGGAAGCTCTTTAATCCATAA
>Glyma09g02140.1 sequence type=predicted peptide gene model=Glyma09g02140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKSSALEYINQMFPNEASLSGVEPLMQKIQNEIRTVDAGILAAVRQQSNSGTKAKEDLAAATRAVEELMYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIVELRDKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILGNLKEKPDVGTLLLALQRTLEFEDELAEKFGGGTQNREIGNEIEEIGKGTNSSSSAMDIRKKYEKKLAAHQGGDSEEKDGSKDLAVPGAGFNFRGIVSSCFEPHLTVYVELEEKTLMESLEKLVQEETWDIEEGSQSNVLSSSMQLFLIIKRSLKRCSALTKNQTLYNLLKVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDPQYSDGVDMSEVQDEFSAVITKSLVTLVHGLETKFDMEMAAMTRVPWGTLESVGDQSEYVNAINLILTISIPALGSLLSPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTSGAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGPGIKQTQIAPSIVPAAAPVAPVVPSPSAIGLIASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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